Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008156.1 Corchorus capsularis cultivar CVL-1 contig08177, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39188

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
812--880
29
2.3
30
87
9
97
55
10
15
18
1.68
10643--10691
23
2.1
23
92
0
80
14
12
24
48
1.77
11340--11379
1
40.0
1
100
0
80
100
0
0
0
0.00
18085--18237
71
2.2
71
95
0
279
32
16
3
47
1.65
18384--18418
3
11.7
3
100
0
70
34
31
0
34
1.58
18436--18857
218
1.9
218
98
0
808
38
12
18
30
1.88
23819--24043
87
2.6
86
93
2
389
37
12
13
37
1.82
24756--24802
18
2.7
18
83
6
62
34
10
0
55
1.35
24753--24793
21
2.0
21
95
0
73
31
14
0
53
1.41
24845--24872
2
14.0
2
100
0
56
50
0
0
50
1.00
33233--33313
31
2.6
31
92
0
135
24
24
9
40
1.85
34481--34549
31
2.2
31
89
0
102
37
24
23
14
1.92
34492--34564
31
2.4
31
88
4
103
39
23
23
13
1.90
34520--34620
53
1.9
53
87
0
148
37
21
21
18
1.94
34568--34629
31
2.0
31
83
0
79
35
24
22
17
1.95
37921--37945
13
1.9
13
100
0
50
56
0
0
44
0.99
38507--38547
17
2.4
17
87
0
55
34
26
14
24
1.94
38955--39010
3
18.3
3
80
10
60
33
3
3
58
1.32
38968--39015
25
1.9
25
91
0
78
37
4
4
54
1.39

Tables:   1

The End!