Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008157.1 Corchorus capsularis cultivar CVL-1 contig08178, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60411

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4973--5345
127
3.0
122
83
5
417
37
17
11
32
1.87
5775--5824
26
2.0
26
88
4
75
60
26
2
12
1.43
27127--27637
187
2.7
189
92
2
830
30
12
17
39
1.86
28436--28476
2
20.5
2
94
0
73
0
51
0
48
1.00
30636--30687
17
3.1
17
69
20
54
46
7
19
26
1.77
38153--38193
15
2.7
15
84
0
55
29
4
34
31
1.79
40440--40482
20
2.1
21
86
4
61
20
18
20
39
1.93
42699--42811
56
2.0
56
100
0
226
25
14
28
31
1.94
45858--45912
28
1.9
29
96
3
103
47
5
3
43
1.44
49314--49342
14
2.1
14
100
0
58
0
6
0
93
0.36
50469--50496
1
28.0
1
100
0
56
0
0
0
100
0.00
50788--50835
24
2.0
24
95
0
87
27
20
14
37
1.92
55227--55266
2
19.5
2
89
5
62
45
5
0
50
1.23
56670--56708
2
19.0
2
94
5
69
48
2
0
48
1.15

Tables:   1

The End!