Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008159.1 Corchorus capsularis cultivar CVL-1 contig08180, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51166

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7640--7677
2
19.0
2
100
0
76
50
0
0
50
1.00
11625--11659
18
2.0
17
88
5
52
17
0
0
82
0.66
12668--12730
30
2.1
30
90
0
99
11
23
42
22
1.85
12722--12751
12
2.5
12
88
0
51
13
33
30
23
1.93
14311--14359
24
2.0
24
96
0
89
32
48
14
4
1.62
15699--16323
35
17.9
35
91
1
988
32
17
11
38
1.86
17026--17084
30
2.0
30
89
0
91
44
22
0
33
1.53
17075--17133
20
3.0
20
82
0
64
35
23
1
38
1.65
17115--17193
30
2.6
30
77
0
86
39
10
2
48
1.51
19272--19323
26
2.0
26
88
7
79
13
9
23
53
1.68
25586--25659
27
2.6
28
87
4
96
14
13
25
45
1.82
35578--35926
176
2.0
176
96
0
644
35
14
25
24
1.93
37622--37667
22
2.1
22
100
0
92
30
39
17
13
1.87
44455--44503
21
2.3
21
82
6
55
14
28
16
40
1.87
45631--45704
28
2.6
28
72
17
73
67
4
12
16
1.36
49129--49184
27
2.1
27
82
0
67
21
19
17
41
1.91
49149--49484
63
5.3
63
85
6
423
21
18
18
42
1.90
49151--49543
126
3.1
123
79
10
404
20
18
18
42
1.89
49792--49865
26
2.7
27
87
10
98
14
12
27
45
1.80

Tables:   1

The End!