genome.fa.s8165.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008165.1 Corchorus capsularis cultivar CVL-1 contig08186, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47646

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10898--10933	18	2.0	18	100	0	72	11	27	11	50	1.72
11964--12023	31	1.9	31	100	0	120	20	16	21	41	1.90
12354--12408	27	2.2	26	83	9	69	58	9	0	32	1.30
15982--16067	45	1.9	45	97	0	163	16	18	44	20	1.87
16062--16207	48	3.0	48	95	0	256	27	18	42	11	1.85
21251--21346	31	3.1	31	100	0	192	41	22	15	19	1.89
21637--21699	32	2.0	32	87	0	90	39	7	12	39	1.73
24371--24441	31	2.3	31	87	0	97	30	18	15	35	1.92
26826--26969	65	2.2	67	82	5	168	41	4	16	36	1.70
26926--27008	37	2.2	37	82	8	96	34	1	21	42	1.61
26853--27067	104	2.1	104	91	1	351	36	3	19	40	1.70
26990--27168	71	2.6	68	84	5	227	37	4	19	38	1.72
28217--28301	22	3.9	22	72	10	75	36	10	16	36	1.83
28413--28631	22	9.8	22	70	20	91	39	9	15	35	1.80
28568--28649	21	3.6	23	82	11	89	41	8	12	37	1.73
28852--29005	22	7.1	21	70	17	84	42	9	13	33	1.77
28867--28990	44	2.8	43	80	13	137	42	9	12	35	1.75
28861--29030	44	3.9	44	75	12	134	42	8	14	34	1.77
29035--29142	23	4.7	23	89	1	155	41	6	12	38	1.69
29163--29205	22	2.0	22	86	9	61	39	9	18	32	1.83
29225--29287	22	2.8	22	76	11	65	31	11	19	38	1.86
29223--29318	45	2.2	44	79	5	104	34	9	16	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34819--34963	57	2.5	57	94	2	247	30	18	13	37	1.89
38410--38439	15	2.0	15	93	0	51	43	26	10	20	1.83
42530--42607	32	2.6	31	76	13	83	33	15	30	20	1.94
44772--44813	22	1.9	22	100	0	84	14	23	40	21	1.90
45109--45231	45	2.8	44	66	19	110	32	13	21	32	1.92

Tables:   1

The End!