Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008166.1 Corchorus capsularis cultivar CVL-1 contig08187, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40031

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1921--1954
12
2.7
13
90
4
52
20
11
8
58
1.59
11205--11242
20
1.9
20
88
0
58
65
10
7
15
1.45
12791--12841
22
2.4
21
87
6
68
60
5
9
23
1.50
12808--12848
20
2.0
21
85
4
57
60
4
14
19
1.51
18223--18260
20
1.9
20
88
0
58
65
10
7
15
1.45
35637--35677
15
2.7
16
77
11
50
41
0
7
51
1.30
36567--36845
108
2.5
108
91
6
443
38
10
1
49
1.46
37768--37802
17
1.9
17
88
11
52
34
0
2
62
1.10

Tables:   1

The End!