genome.fa.s8167.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008167.1 Corchorus capsularis cultivar CVL-1 contig08188, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46915

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5--49	2	22.5	2	100	0	90	0	48	0	51	1.00
678--710	2	17.0	2	87	6	50	45	0	3	51	1.16
678--714	12	3.2	12	85	7	51	43	0	5	51	1.24
2540--2571	13	2.5	13	94	0	55	25	34	21	18	1.96
6175--6316	33	4.3	33	94	0	239	44	18	10	26	1.82
6175--6347	66	2.6	66	86	1	204	42	19	9	28	1.82
6343--6446	33	3.2	32	81	6	118	44	19	10	25	1.83
7915--7947	5	6.6	5	89	10	50	18	0	0	81	0.68
16226--16293	31	2.3	28	80	14	75	52	5	10	30	1.59
16287--16475	49	3.8	49	87	1	279	39	6	17	37	1.75
16258--16464	49	4.2	50	85	6	255	41	6	16	34	1.75
16287--16464	99	1.8	98	90	1	284	39	6	17	35	1.77
16427--16506	42	1.9	42	86	0	115	40	7	18	33	1.79
17416--17631	43	5.0	43	93	1	344	37	7	17	37	1.78
17497--17762	35	7.2	35	70	20	130	38	7	16	37	1.78
17660--17721	19	3.4	19	65	13	58	37	9	16	37	1.81
17668--17774	35	3.2	34	88	5	130	36	8	17	37	1.80
20731--20826	33	2.9	33	82	0	120	45	16	11	26	1.81
27683--27750	35	1.9	35	93	0	118	29	19	20	30	1.97
27744--27932	87	2.1	86	80	10	195	28	16	25	29	1.97
32625--32692	31	2.3	29	80	10	75	54	5	10	29	1.58
32658--32880	49	4.6	48	86	6	254	40	6	17	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32687--32875	49	3.8	49	90	1	288	38	6	17	37	1.76
32687--32875	99	1.9	98	89	1	288	38	6	17	37	1.76
32827--32906	42	1.9	42	81	0	97	41	6	17	35	1.75
33816--33898	43	1.9	43	97	0	157	34	7	19	38	1.79
33971--34009	18	2.2	18	100	0	78	35	5	20	38	1.75
33928--34052	61	2.0	61	95	0	223	36	5	19	38	1.75
33989--34095	43	2.5	43	96	0	196	36	7	18	37	1.79
33816--34270	104	4.4	102	88	6	596	37	6	18	38	1.76
34032--34153	61	2.0	61	96	0	226	35	7	19	37	1.80
34075--34113	18	2.2	18	95	0	69	35	7	17	38	1.79
34093--34209	43	2.7	43	90	0	180	37	5	17	38	1.75
34193--34232	21	1.9	21	89	0	62	45	2	17	35	1.62
34201--34243	21	2.0	21	86	0	59	37	2	18	41	1.63
34238--34299	19	3.4	19	65	13	58	37	9	16	37	1.81
34238--34340	35	2.9	35	89	0	152	36	7	17	37	1.79
36074--36111	18	2.1	19	90	5	60	28	13	39	18	1.88
36857--36904	21	2.4	20	82	6	53	33	22	27	16	1.96
40430--40487	30	1.9	30	89	6	91	22	32	17	27	1.96
42266--42323	30	1.9	30	93	6	100	20	31	18	29	1.97
43490--43559	28	2.5	28	90	2	106	15	15	21	47	1.83
45945--46284	50	6.9	50	76	9	304	41	3	16	38	1.66
45945--46284	100	3.4	100	87	4	467	41	3	16	38	1.66

Tables:   1

The End!