Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008169.1 Corchorus capsularis cultivar CVL-1 contig08190, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63808

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69--105
13
2.8
13
87
4
56
18
13
2
64
1.39
1073--1097
13
1.9
13
100
0
50
36
8
16
40
1.77
2034--2070
2
20.0
2
84
15
53
45
0
0
54
1.00
2867--3143
109
2.5
109
93
4
459
38
11
1
48
1.50
4529--4608
38
2.1
37
97
2
151
30
10
6
53
1.58
4915--4961
23
2.0
23
100
0
94
25
17
10
46
1.79
5131--5166
10
3.6
10
92
0
54
36
19
8
36
1.82
5731--5792
3
21.0
3
83
3
81
32
4
32
30
1.79
6877--6919
12
3.5
12
87
6
68
25
20
16
37
1.93
13270--13393
60
2.0
63
87
7
182
39
14
10
35
1.81
19336--19407
31
2.3
31
87
0
108
38
19
9
31
1.84
22726--22764
16
2.4
16
82
0
51
43
35
12
7
1.72
23385--23422
2
19.0
2
89
10
60
50
2
0
47
1.15
24185--24229
17
2.5
17
89
7
63
55
17
2
24
1.53
24178--24227
17
2.6
19
75
18
59
56
16
2
26
1.51
25049--25105
21
2.7
21
100
0
114
33
28
35
3
1.74
30216--30271
28
2.0
28
92
0
94
39
10
7
42
1.67
38421--38771
120
3.0
119
80
11
420
22
26
11
39
1.88
38538--38739
111
1.8
111
84
4
282
22
26
10
40
1.87
40241--40307
17
4.1
17
77
9
77
17
10
32
38
1.84
40259--40362
31
3.3
31
86
4
129
16
11
33
38
1.85
40505--40543
20
2.0
20
90
10
62
35
5
2
56
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40563--40659
16
5.9
16
70
9
70
7
12
28
51
1.66
40563--40644
32
2.6
32
73
11
87
8
13
28
50
1.71
40607--40656
18
2.9
18
79
5
50
4
12
32
52
1.57
42656--42692
12
2.8
13
88
12
58
32
0
0
67
0.91
48092--48130
14
2.7
15
88
8
62
41
0
5
53
1.23
48084--48140
19
3.1
18
73
17
55
38
0
5
56
1.22
48183--48223
2
21.0
2
90
5
66
51
2
0
46
1.14
51385--51572
90
2.1
90
82
4
218
34
23
7
34
1.83
51835--52214
178
2.1
177
80
6
419
37
15
12
33
1.85
54737--54784
22
2.2
22
81
7
53
47
10
16
25
1.78
54749--54791
22
2.0
22
86
4
61
41
13
18
25
1.88
57808--57848
15
2.7
15
82
17
57
73
0
4
21
1.02
58579--59831
626
2.0
626
97
0
2380
39
18
15
26
1.91
62520--62547
2
14.0
2
100
0
56
50
0
0
50
1.00
63350--63400
25
2.0
25
85
11
68
52
1
7
37
1.42

Tables:   1

The End!