Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008171.1 Corchorus capsularis cultivar CVL-1 contig08192, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11594

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2677--2733
29
2.0
29
82
6
71
19
17
8
54
1.68
4481--4555
37
2.0
37
97
0
141
22
16
20
41
1.90
9804--10430
22
29.0
22
68
12
255
35
15
9
38
1.81
10093--10194
23
4.5
23
82
4
102
37
14
7
40
1.75
10467--10865
22
18.0
22
67
14
131
33
16
9
40
1.81
10442--10635
44
4.4
44
73
11
134
33
14
9
42
1.77
10442--10608
88
1.9
88
81
7
205
32
14
10
42
1.79
10597--10696
21
4.5
22
72
15
82
33
13
10
44
1.76
10894--11079
22
8.4
22
73
16
134
39
18
8
33
1.82
10901--11076
44
4.0
42
80
10
156
38
17
9
34
1.82
10894--11078
66
2.8
66
77
11
173
38
18
8
33
1.82
11242--11279
19
2.0
20
85
15
53
63
2
5
28
1.30
11480--11538
31
1.9
32
89
6
95
47
3
16
32
1.64
11480--11545
31
2.1
31
86
8
89
48
4
18
28
1.67

Tables:   1

The End!