Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008173.1 Corchorus capsularis cultivar CVL-1 contig08194, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113001

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
223--337
56
2.0
58
89
6
180
10
24
16
48
1.77
827--853
13
2.1
13
100
0
54
25
22
14
37
1.93
936--1298
194
1.9
193
89
2
566
31
14
14
39
1.86
2124--2203
40
2.0
40
97
0
151
18
11
20
50
1.77
25108--25182
29
2.6
29
97
0
141
53
4
20
22
1.62
29038--29087
26
1.9
26
83
0
64
30
4
36
30
1.76
29736--29804
2
37.5
2
75
16
69
47
1
0
50
1.09
29729--29806
23
3.4
22
79
13
77
48
1
0
50
1.09
29732--29804
25
2.7
29
87
10
109
47
1
0
50
1.09
32245--32276
6
5.5
6
96
3
57
31
0
12
56
1.37
33428--33726
151
2.0
151
97
0
562
28
15
24
31
1.95
35010--35096
33
2.6
33
94
1
156
14
16
36
32
1.89
36343--36379
19
2.0
18
89
5
56
29
29
5
35
1.80
49190--49539
33
10.6
33
85
0
378
26
47
11
15
1.78
49190--49591
66
6.1
66
83
1
439
25
47
11
15
1.79
49206--49600
99
4.0
99
86
1
542
26
47
11
14
1.79
49200--49595
33
12.1
32
82
3
153
26
47
11
14
1.78
54503--54760
134
1.9
134
80
6
299
25
29
14
30
1.95
56970--57052
12
7.3
12
69
16
61
46
0
0
53
1.00
57380--57407
13
2.2
13
100
0
56
39
0
14
46
1.44
58591--58641
25
2.0
25
96
0
93
41
5
15
37
1.72
62366--62395
16
1.9
16
93
6
53
46
0
20
33
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65132--65173
2
21.0
2
100
0
84
0
50
0
50
1.00
68968--69031
31
2.1
31
85
2
85
14
6
23
56
1.61
81553--81590
11
3.5
11
89
10
51
39
0
2
57
1.12
82229--82280
25
2.1
24
89
3
77
36
26
0
36
1.57
82297--82364
15
5.1
15
70
26
62
52
11
1
33
1.47
82297--82364
26
2.6
26
95
0
118
52
11
1
33
1.47
82626--82669
21
2.1
21
87
4
63
36
9
36
18
1.82
83045--83108
21
3.0
21
84
4
85
32
9
17
40
1.81
88091--88120
2
15.0
2
100
0
60
50
0
0
50
1.00
92618--92648
15
2.1
15
100
0
62
64
6
12
16
1.47
97834--97905
32
2.2
32
92
0
117
30
11
31
26
1.91
99015--99072
29
2.0
30
83
10
75
27
25
15
31
1.96
102291--102347
29
2.0
29
82
6
71
35
19
10
35
1.86
104913--104969
19
3.1
19
78
9
64
47
19
17
15
1.83
104937--105003
28
2.3
30
82
17
88
47
17
19
14
1.82
110319--110377
30
2.0
30
83
6
77
30
25
8
35
1.86
110386--110504
32
3.8
31
78
11
104
36
10
26
26
1.89
110386--110469
32
2.6
33
86
3
109
29
10
32
27
1.90
110442--110504
29
2.1
30
85
8
85
46
11
17
25
1.81

Tables:   1

The End!