Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008175.1 Corchorus capsularis cultivar CVL-1 contig08196, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27053

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1642--1677
4
8.8
4
90
3
54
0
19
0
80
0.71
4700--4742
22
2.0
22
85
0
59
44
11
6
37
1.68
4709--4804
22
4.5
22
71
23
71
39
10
8
41
1.69
4708--4859
62
2.5
62
91
2
234
36
11
9
42
1.74
4768--5262
22
22.8
22
70
13
178
35
16
9
38
1.82
5115--5221
23
4.8
22
82
10
110
35
15
10
38
1.82
5274--5355
22
3.8
21
80
7
92
40
12
9
37
1.76
5480--5557
22
3.5
22
79
6
86
32
15
10
42
1.80
6500--6596
38
2.6
37
78
4
113
54
12
18
14
1.70
6719--6786
31
2.2
31
92
7
113
52
2
11
32
1.53
8642--8676
18
1.9
18
88
0
52
34
17
2
45
1.63
12681--12820
22
6.3
22
75
9
113
32
8
20
39
1.82
12856--13225
22
16.7
21
69
14
140
39
10
16
33
1.82
13419--13827
44
9.4
44
71
9
221
38
10
15
36
1.81
13522--13629
45
2.4
45
83
7
139
39
9
13
37
1.77
13304--13836
22
24.3
22
68
13
160
38
9
15
36
1.80
13794--13842
22
2.2
22
85
7
64
51
12
14
22
1.75
16754--16788
1
35.0
1
100
0
70
100
0
0
0
0.00
17371--17411
2
21.0
2
95
5
75
51
48
0
0
1.00
20356--20400
21
2.1
22
87
4
65
20
31
8
40
1.83
23133--23157
4
6.2
4
100
0
50
24
0
0
76
0.80
25796--25830
15
2.3
15
90
0
52
0
14
0
85
0.59

Tables:   1

The End!