Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008178.1 Corchorus capsularis cultivar CVL-1 contig08199, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28277

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4016--4232
38
5.7
38
95
1
380
22
19
36
21
1.95
4243--4267
6
4.2
6
100
0
50
16
0
36
48
1.46
7594--7771
38
4.7
38
98
0
320
21
20
37
20
1.95
7782--7806
6
4.2
6
100
0
50
16
0
36
48
1.46
9816--9877
23
2.7
23
82
5
72
25
37
16
20
1.93
9946--9985
13
3.0
14
73
26
50
27
42
15
15
1.86
9935--9985
26
2.0
26
100
0
102
27
43
13
15
1.85
13414--13557
36
4.0
36
89
6
222
25
20
6
46
1.76
13417--13557
71
2.0
72
90
6
225
26
21
7
45
1.77
13550--13639
11
8.2
11
90
4
137
8
24
8
57
1.57
13551--13639
34
2.7
32
89
6
99
8
24
8
57
1.58
13550--13639
45
2.0
43
91
4
144
8
24
8
57
1.57
13680--13828
36
4.2
36
85
8
150
28
12
10
48
1.74
13715--13829
33
3.3
34
92
6
187
29
10
10
49
1.70
13835--13921
41
2.1
41
85
4
113
25
19
9
45
1.79
14758--14820
30
2.1
30
93
0
108
11
26
39
22
1.87
14811--14844
12
2.8
12
90
0
59
17
23
29
29
1.97
16712--16797
33
2.6
33
92
0
145
43
18
9
29
1.81
16813--16875
33
1.9
33
86
0
90
47
19
7
25
1.76
18307--18355
21
2.3
21
75
0
53
22
4
6
67
1.30
19369--19431
30
2.1
30
93
0
108
9
26
41
22
1.84
19392--19473
42
2.0
42
90
0
128
12
29
34
24
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19660--19754
36
2.7
35
81
4
120
28
18
6
46
1.74
19660--19762
35
2.9
34
81
7
125
28
19
6
45
1.75
19799--19939
37
3.7
37
78
6
124
26
14
9
50
1.72
23194--23235
10
4.5
10
80
17
54
76
9
0
14
1.02
23194--23226
17
1.9
17
93
0
57
75
9
0
15
1.03
24154--24189
18
2.0
18
89
10
56
55
11
8
25
1.62

Tables:   1

The End!