Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008181.1 Corchorus capsularis cultivar CVL-1 contig08202, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46298

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51--117
31
2.2
31
84
7
84
25
17
26
29
1.98
1630--1830
100
2.0
100
99
0
393
39
11
7
40
1.71
2634--2696
32
2.0
31
87
6
92
25
12
11
50
1.73
7159--7352
79
2.4
80
95
1
354
21
9
24
44
1.82
7159--7357
40
5.0
40
78
1
220
21
10
23
44
1.83
10751--10789
2
20.0
2
89
5
62
51
0
0
48
1.00
12987--13033
16
3.0
16
78
6
60
38
38
12
10
1.78
12988--13061
31
2.4
32
81
4
80
41
36
13
8
1.74
14378--14415
15
2.4
17
87
12
55
34
39
18
7
1.80
17374--17417
19
2.3
19
80
0
52
6
18
4
70
1.27
28233--28273
21
2.0
21
85
0
55
51
14
17
17
1.77
29561--29607
21
2.2
21
88
0
67
4
36
2
57
1.30
30217--30257
18
2.3
18
91
0
64
19
31
17
31
1.95
32400--32432
15
2.2
15
94
0
57
12
78
0
9
0.95
33249--33310
31
2.0
31
100
0
124
32
12
3
51
1.56
33705--33982
106
2.6
105
86
4
380
43
8
8
39
1.66
35832--35894
33
1.9
33
90
0
99
26
28
15
28
1.96
37585--37650
33
2.0
33
96
0
123
30
18
10
40
1.84

Tables:   1

The End!