Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008186.1 Corchorus capsularis cultivar CVL-1 contig08207, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70780

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8897--10660
154
11.5
154
87
1
2408
41
18
17
22
1.90
11624--11676
11
5.2
10
80
17
56
37
18
3
39
1.69
12486--12525
18
2.3
18
91
4
64
32
10
5
52
1.56
13606--13644
7
5.9
7
87
6
55
66
0
2
30
1.05
13606--13646
12
3.2
13
86
6
57
63
0
2
34
1.08
15708--17139
475
3.0
474
94
0
2452
29
19
18
32
1.96
23193--23257
26
2.4
27
84
2
87
47
20
10
21
1.80
30170--30254
41
2.1
41
86
8
120
16
11
17
54
1.71
31799--31888
29
3.3
29
84
15
145
21
8
7
62
1.50
31799--31876
24
3.0
24
90
9
111
23
7
6
62
1.45
37258--37302
20
2.2
20
100
0
90
15
26
22
35
1.94
37260--37310
20
2.8
18
85
11
61
17
23
23
35
1.95
40832--41151
48
6.4
48
79
11
331
11
27
24
36
1.90
40868--40981
60
1.9
60
87
3
167
11
25
21
41
1.87
49233--49698
48
9.8
48
86
1
578
12
24
25
37
1.91
60588--60950
72
5.1
73
90
1
504
23
26
19
31
1.98
62145--62179
16
2.2
16
94
0
61
25
0
31
42
1.55
65500--65608
33
3.3
33
90
0
173
44
16
10
28
1.80
65634--65738
33
3.2
33
78
2
122
45
19
10
24
1.81
68166--68196
12
2.6
12
94
0
53
12
32
38
16
1.86
68149--68232
42
2.0
42
86
4
116
10
27
39
22
1.87
68479--68802
86
3.9
86
73
16
261
46
4
15
33
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68488--68785
161
1.8
161
90
3
483
44
5
16
33
1.70
68945--68985
14
3.0
14
79
17
50
63
0
7
29
1.21

Tables:   1

The End!