Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008187.1 Corchorus capsularis cultivar CVL-1 contig08208, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1900
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28


Found at i:69 original size:33 final size:33

Alignment explanation


    Indices: 39--126  Score: 97
    Period size: 33  Copynumber: 2.7  Consensus size: 33

         29 TGACCGGTTG

                       *            *         
         39 TGGCCGGACATGTCC-ATGTCGCGTGGCCGGTGA
          1 TGGCCGGACATCTCCGA-GTCGCGCGGCCGGTGA

                   *                        *
         72 TGGCCGGGCATCTCCGAGTCGCGCGGCCGGTGT
          1 TGGCCGGACATCTCCGAGTCGCGCGGCCGGTGA

                   * *     *      
        105 TGGCCGGGCTTCTCCAAGTCGC
          1 TGGCCGGACATCTCCGAGTCGC

        127 ATGGCCAGTC


Statistics
Matches: 48,  Mismatches: 6, Indels: 2
        0.86            0.11        0.04

Matches are distributed among these distances:
  33   47  0.98
  34    1  0.02

ACGTcount: A:0.09, C:0.32, G:0.39, T:0.20


Consensus pattern (33 bp):   
TGGCCGGACATCTCCGAGTCGCGCGGCCGGTGA
Done.