Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008193.1 Corchorus capsularis cultivar CVL-1 contig08214, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50837

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
213--247
13
2.7
13
86
0
52
57
11
11
20
1.64
16661--16708
25
2.0
25
87
4
71
39
2
12
45
1.54
17955--18001
22
2.1
23
88
4
69
44
12
8
34
1.73
17963--18034
22
3.3
22
78
7
65
41
19
6
31
1.78
18036--18087
22
2.4
22
90
0
77
32
13
17
36
1.89
18277--18464
22
8.5
22
73
10
127
32
11
11
44
1.76
18277--18447
66
2.6
65
79
10
161
34
11
11
42
1.77
18276--18466
44
4.3
44
73
7
156
32
12
11
43
1.77
26593--26648
24
2.3
24
84
0
76
41
14
12
32
1.83
30721--30781
31
1.9
32
93
3
106
42
34
16
6
1.74
30714--30783
16
4.4
16
85
3
106
41
37
15
5
1.71
31756--31850
37
2.6
37
82
0
118
58
10
15
14
1.62
31961--32013
27
2.0
26
82
17
65
49
1
9
39
1.46
32096--32130
17
2.1
17
100
0
70
40
0
11
48
1.39
32142--32180
17
2.3
17
95
0
69
61
0
20
17
1.34
32142--32177
12
3.0
12
91
0
54
63
0
19
16
1.30
39881--40181
165
1.8
165
97
0
575
39
12
18
29
1.88
40152--40204
27
2.0
27
92
0
88
32
11
20
35
1.88
40611--40662
27
1.9
27
92
0
86
36
9
17
36
1.82
40872--40923
24
2.2
24
82
3
61
26
15
3
53
1.59
45014--45052
21
1.9
21
94
5
71
5
28
35
30
1.79
45018--45064
21
2.2
21
88
0
67
8
34
27
29
1.87

Tables:   1

The End!