Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008198.1 Corchorus capsularis cultivar CVL-1 contig08219, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85014

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--49
2
24.5
2
100
0
98
0
51
0
48
1.00
2543--2567
2
12.5
2
100
0
50
52
0
0
48
1.00
12318--12345
2
14.0
2
100
0
56
50
0
0
50
1.00
14156--14182
2
13.5
2
100
0
54
51
0
0
48
1.00
21639--21789
75
2.0
74
97
1
284
46
10
7
35
1.68
22413--22437
11
2.3
11
100
0
50
8
8
20
64
1.46
22474--22553
37
2.2
37
100
0
160
28
22
12
36
1.91
22648--22682
16
2.2
16
94
0
61
11
28
17
42
1.83
23599--23642
21
2.1
21
100
0
88
43
18
4
34
1.70
28378--28422
7
6.3
7
82
12
56
82
0
17
0
0.68
28375--28424
25
2.0
25
85
14
68
82
0
18
0
0.68
28376--28422
15
3.1
14
80
20
51
82
0
17
0
0.66
32069--32094
2
13.0
2
100
0
52
50
0
0
50
1.00
40967--41074
53
2.0
53
94
0
189
24
16
11
48
1.79
53839--54259
231
1.8
229
90
3
673
29
21
16
32
1.96
64010--64067
7
8.0
7
79
14
57
53
1
0
44
1.10
64012--64059
16
2.9
16
87
9
62
54
0
0
45
0.99
64138--64203
31
2.1
30
83
10
80
30
19
4
45
1.70
64544--64589
22
2.1
22
84
4
58
56
4
15
23
1.57
67737--67769
16
2.1
16
100
0
66
57
12
6
24
1.57
71514--71548
11
3.2
11
83
0
52
77
17
5
0
0.96
73126--73195
36
1.9
37
85
2
97
42
17
14
25
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74630--74659
15
2.0
15
93
0
51
26
23
26
23
2.00
74735--74807
31
2.4
31
90
0
110
28
24
23
23
1.99
76077--76147
3
24.0
3
78
8
56
39
1
1
57
1.16
78637--78708
36
2.0
37
94
2
128
19
19
13
47
1.83
79846--80137
146
2.0
146
100
0
584
28
10
24
35
1.90
80976--81137
81
2.0
81
100
0
324
27
6
24
41
1.78

Tables:   1

The End!