Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008201.1 Corchorus capsularis cultivar CVL-1 contig08222, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22665

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
620--689
28
2.5
28
86
4
88
51
22
10
15
1.73
3588--3625
18
2.2
17
90
4
58
39
7
2
50
1.46
5285--5348
32
2.0
32
90
3
103
48
17
10
23
1.78
8460--8544
32
2.7
31
81
3
116
28
21
23
27
1.99
8566--8603
20
1.9
20
88
0
58
21
42
10
26
1.85
8834--8861
14
2.0
14
100
0
56
28
14
7
50
1.69
9019--9054
17
2.1
18
89
5
56
0
11
5
83
0.80
9021--9061
17
2.5
16
84
4
55
0
14
2
82
0.76
9033--9062
13
2.2
14
94
5
53
0
13
3
83
0.77
18624--19073
149
3.0
149
95
0
783
29
13
22
34
1.93
19538--19777
124
1.9
124
93
0
417
29
17
21
32
1.96
19936--20054
48
2.5
48
84
2
150
26
14
10
48
1.75
19966--20060
48
2.0
48
93
0
163
25
13
10
50
1.73
20070--20378
167
1.9
167
95
0
555
25
15
11
47
1.79

Tables:   1

The End!