genome.fa.s8205.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008205.1 Corchorus capsularis cultivar CVL-1 contig08226, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35240

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2389--2448	26	2.3	26	88	8	86	31	28	20	20	1.97
3552--3596	21	2.1	22	87	4	65	15	40	8	35	1.79
14161--14188	3	9.3	3	100	0	56	67	0	0	32	0.91
16021--16105	30	2.8	30	89	3	127	21	21	21	36	1.95
18316--18346	1	31.0	1	100	0	62	0	0	0	100	0.00
20670--20798	31	4.5	31	74	16	132	16	22	27	33	1.95
20687--20789	53	1.9	53	88	0	152	17	20	26	35	1.94
25720--25857	33	4.2	33	83	7	156	26	7	21	44	1.79
27224--27397	30	5.6	30	74	20	146	16	22	4	56	1.58
27262--27310	25	2.0	25	95	0	89	18	22	0	59	1.38
27234--27342	57	1.9	56	89	9	168	15	22	3	57	1.54
27234--27350	55	2.1	54	86	10	157	15	23	3	57	1.54
27335--27375	22	1.9	21	85	5	55	17	24	2	56	1.53
27224--27383	16	10.4	15	67	23	68	15	22	4	57	1.56
27159--27457	118	2.4	122	82	13	323	16	22	4	55	1.59
27509--27603	40	2.4	40	91	1	147	16	23	2	57	1.50
27603--27702	32	2.9	35	83	7	116	18	21	4	57	1.57
27645--27700	16	3.5	16	78	9	69	17	23	3	55	1.58
27613--27797	36	5.7	32	74	14	114	17	24	3	54	1.58
27681--27728	22	2.2	22	92	0	78	18	22	4	54	1.61
27640--27761	54	2.2	55	86	5	165	18	22	3	55	1.56
27597--27797	90	2.2	92	82	4	244	17	24	3	54	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27692--27821	36	3.6	36	92	0	206	15	26	3	54	1.56
27848--27964	49	2.4	48	83	7	130	25	21	5	47	1.71
27911--28026	57	2.0	58	80	11	132	22	21	6	50	1.71
28165--28353	53	3.8	50	79	13	192	24	17	11	46	1.81
28159--28353	45	4.0	46	79	12	178	24	17	11	46	1.81
28159--28353	97	2.0	98	86	1	275	24	17	11	46	1.81
28174--28382	98	2.1	97	83	6	244	24	16	11	47	1.79
30688--30847	49	3.3	49	93	0	275	30	17	28	23	1.97

Tables:   1

The End!