Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008206.1 Corchorus capsularis cultivar CVL-1 contig08227, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49487

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3216--3242
2
13.5
2
100
0
54
51
0
0
48
1.00
4635--4664
2
15.0
2
100
0
60
50
0
0
50
1.00
11978--12041
32
2.0
32
87
0
92
18
10
18
51
1.75
12456--12592
69
2.0
69
85
2
186
26
11
13
48
1.77
13209--13241
3
11.0
3
100
0
66
66
0
0
33
0.92
17967--18026
30
2.1
28
90
9
95
28
10
23
38
1.87
24059--24106
21
2.3
21
92
3
80
45
2
25
27
1.64
24686--24758
27
2.6
28
84
2
103
53
6
5
34
1.51
24686--24759
28
2.7
29
83
8
100
52
6
5
35
1.51
24814--24897
39
2.1
39
82
6
98
60
5
11
21
1.52
24906--24964
26
2.4
23
75
20
57
50
1
6
40
1.39
25829--25854
12
2.2
12
100
0
52
57
23
0
19
1.40
26852--27019
31
5.5
31
84
1
185
17
20
26
35
1.95
26871--27019
61
2.4
62
84
1
192
17
19
25
37
1.93
35077--35134
21
2.7
21
81
2
53
27
15
17
39
1.90
38785--38833
21
2.3
21
82
6
55
42
16
26
14
1.86
41725--41777
28
1.9
28
92
3
90
16
18
24
39
1.91
41731--41803
28
2.6
28
88
0
101
15
10
28
45
1.80
41905--42024
59
2.0
59
96
0
222
26
10
16
45
1.80
44735--44827
7
13.3
7
70
0
69
54
5
24
15
1.61
44673--44831
35
4.4
35
84
9
178
55
4
25
15
1.58
44794--44917
29
4.4
30
66
18
86
56
4
20
18
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44868--44966
36
3.2
29
77
18
92
56
5
21
17
1.59
44885--44990
36
2.9
36
87
2
142
55
4
20
18
1.60
44956--45000
21
2.1
21
83
0
54
48
2
22
26
1.62
44997--45129
28
4.9
28
73
11
114
51
2
21
24
1.59
44985--45250
26
9.7
26
69
16
146
56
2
20
21
1.55
44985--45171
80
2.3
82
85
6
245
52
3
20
22
1.60
45138--45256
56
2.1
54
80
13
127
63
1
18
15
1.39

Tables:   1

The End!