Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008207.1 Corchorus capsularis cultivar CVL-1 contig08228, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38636

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8069--8136
34
2.1
34
86
5
95
29
4
10
55
1.52
9719--9754
19
1.9
18
88
5
54
41
2
22
33
1.68
12199--12248
21
2.4
21
82
0
64
58
2
34
6
1.34
15965--16006
21
2.0
20
86
4
57
42
11
16
28
1.84
18713--18780
32
2.1
32
86
5
93
14
8
38
38
1.78
18979--19063
29
2.9
29
84
8
102
15
27
28
29
1.96
19007--19077
31
2.3
30
83
9
81
18
28
23
29
1.98
19072--19122
24
2.1
24
85
0
66
15
31
23
29
1.95
19509--19570
16
3.9
16
70
8
63
4
11
33
50
1.60
25770--25810
20
2.0
21
90
4
66
14
9
12
63
1.52
28828--28861
9
3.9
9
88
7
52
11
14
0
73
1.10
28828--28865
8
4.6
8
87
12
51
10
13
0
76
1.02
28841--28893
19
2.7
19
85
5
70
3
16
1
77
1.01
29878--29916
20
2.0
20
89
0
60
56
12
2
28
1.50
32054--32102
21
2.3
21
85
0
62
12
30
24
32
1.92
34681--34719
20
2.0
20
85
10
53
30
25
12
30
1.93

Tables:   1

The End!