Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008210.1 Corchorus capsularis cultivar CVL-1 contig08231, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4586
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--66  Score: 132
    Period size: 2  Copynumber: 33.0  Consensus size: 2

                                                                          
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

                                               
         43 CT CT CT CT CT CT CT CT CT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT

         67 GTGCAATAAT


Statistics
Matches: 64,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   64  1.00

ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50


Consensus pattern (2 bp):   
CT

Found at i:385 original size:53 final size:53

Alignment explanation


    Indices: 322--428  Score: 178
    Period size: 53  Copynumber: 2.0  Consensus size: 53

        312 CGGTTGTTTT

                          *                          *           
        322 ATTTTATAAATTATTTTAAGAAAATTCAGTTAAGAAACCAACTTTTGTTGTGA
          1 ATTTTATAAATTATCTTAAGAAAATTCAGTTAAGAAACCAAATTTTGTTGTGA

                        *                        *               
        375 ATTTTATAAATTCTCTTAAGAAAATTCAGTTAAGAAATCAAATTTTGTTGTGA
          1 ATTTTATAAATTATCTTAAGAAAATTCAGTTAAGAAACCAAATTTTGTTGTGA

             
        428 A
          1 A

        429 ATGATAACAA


Statistics
Matches: 50,  Mismatches: 4, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  53   50  1.00

ACGTcount: A:0.40, C:0.07, G:0.11, T:0.41


Consensus pattern (53 bp):   
ATTTTATAAATTATCTTAAGAAAATTCAGTTAAGAAACCAAATTTTGTTGTGA
Done.