Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008211.1 Corchorus capsularis cultivar CVL-1 contig08232, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2395
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33


Found at i:71 original size:27 final size:27

Alignment explanation


    Indices: 41--108  Score: 93
    Period size: 27  Copynumber: 2.5  Consensus size: 27

         31 GTCAGACTCT

                 *           *          
         41 CATTCCAAGTTAGTCAAGACAG-TTCTC
          1 CATTCAAAGTTAGTCAAAACAGTTTC-C

                     *                 
         68 CATTCAAAGCTAGTCAAAACAGTTTCC
          1 CATTCAAAGTTAGTCAAAACAGTTTCC

                          
         95 CATTCAAAGTTAGT
          1 CATTCAAAGTTAGT

        109 TGCCTAGGAT


Statistics
Matches: 36,  Mismatches: 4, Indels: 2
        0.86            0.10        0.05

Matches are distributed among these distances:
  27   33  0.92
  28    3  0.08

ACGTcount: A:0.34, C:0.24, G:0.13, T:0.29


Consensus pattern (27 bp):   
CATTCAAAGTTAGTCAAAACAGTTTCC
Done.