Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008212.1 Corchorus capsularis cultivar CVL-1 contig08233, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29917

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
457--536
23
3.5
23
84
0
106
12
20
47
20
1.81
496--618
63
2.0
63
95
0
219
23
22
37
16
1.93
2954--3016
27
2.3
27
91
0
99
23
36
19
20
1.95
3001--3049
21
2.3
22
89
3
57
16
40
20
22
1.91
3302--3379
26
3.0
26
75
10
81
58
8
0
32
1.29
3302--3380
13
5.9
14
73
19
71
58
8
0
32
1.29
3493--3645
32
4.8
32
90
0
234
24
35
26
13
1.92
3839--3922
25
3.4
25
90
3
127
36
0
28
34
1.58
4779--4858
30
2.7
28
81
12
97
36
13
23
26
1.92
5000--5035
2
18.0
2
94
0
63
47
0
2
50
1.15
7056--7111
25
2.3
24
87
9
78
46
0
1
51
1.11
20074--20115
6
6.7
6
97
2
66
85
0
14
0
0.59
20228--20294
30
2.2
31
83
2
82
40
13
19
26
1.89
23170--23194
13
1.9
13
100
0
50
80
0
0
20
0.72
27129--27486
179
2.0
179
100
0
716
41
12
13
32
1.81

Tables:   1

The End!