Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008213.1 Corchorus capsularis cultivar CVL-1 contig08234, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62909

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5070--5301
115
2.0
115
99
0
455
36
18
14
31
1.90
6437--6701
30
8.7
30
86
2
316
31
16
17
34
1.92
6437--6699
61
4.3
60
84
3
312
31
16
17
34
1.93
6437--6699
91
2.9
91
89
2
377
31
16
17
34
1.93
14206--14253
20
2.3
20
82
3
60
16
8
8
66
1.42
19045--19097
19
2.7
19
82
8
54
60
1
22
15
1.44
24898--24972
16
4.8
16
87
8
109
6
14
38
40
1.73
24961--25027
6
11.7
6
79
9
77
1
22
47
28
1.60
24961--25011
17
3.0
17
94
0
84
1
21
47
29
1.62
24976--25027
23
2.3
23
90
6
79
1
21
50
26
1.59
25776--25826
22
2.3
23
89
3
77
1
19
50
27
1.58
25776--25826
6
9.0
6
83
12
63
1
19
50
27
1.58
25797--25838
16
2.6
16
88
0
57
7
16
42
33
1.75
26709--26773
29
2.2
29
83
10
78
32
16
23
27
1.96
32688--32864
91
1.9
91
98
0
345
36
14
10
38
1.81
37902--37943
21
2.0
21
86
9
59
14
42
7
35
1.73
39194--39218
13
1.9
13
100
0
50
16
16
16
52
1.76
40486--40525
18
2.2
18
95
0
71
42
30
10
17
1.82
47869--47900
16
1.9
17
93
6
57
18
15
25
40
1.90
49918--49966
15
3.2
15
82
5
62
69
0
4
26
1.06
48933--51542
882
3.0
858
81
7
2818
36
17
16
29
1.92
50790--50829
21
1.9
21
84
0
53
65
0
5
30
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51556--51602
15
3.2
15
77
17
53
65
0
4
29
1.11
53135--53160
2
13.0
2
100
0
52
50
0
0
50
1.00
57048--57407
156
2.3
158
80
6
392
30
15
18
35
1.93
57767--57799
17
1.9
17
100
0
66
30
36
6
27
1.81
57948--57987
21
1.9
21
100
0
80
32
30
15
22
1.94
60268--60324
30
1.9
29
82
3
69
40
7
17
35
1.77

Tables:   1

The End!