Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008216.1 Corchorus capsularis cultivar CVL-1 contig08237, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26865

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1457--1495
16
2.4
16
86
0
51
33
20
0
46
1.51
1414--1548
53
2.6
53
85
7
174
26
23
2
47
1.63
1465--1497
16
2.1
16
94
0
57
33
18
0
48
1.48
1519--1614
8
12.4
8
69
18
53
26
23
3
46
1.67
1651--1878
22
10.5
22
81
9
204
28
21
4
45
1.72
1639--1893
8
33.1
8
66
22
54
27
21
4
45
1.71
1651--1936
22
13.6
21
76
16
163
29
20
4
45
1.72
1742--1949
36
5.7
36
74
16
137
30
20
4
44
1.71
1658--2089
44
10.0
41
70
19
103
28
20
5
45
1.73
1830--1988
58
2.7
58
84
5
171
30
20
4
45
1.70
1875--2089
22
9.9
22
68
18
89
28
20
5
45
1.73
1756--2091
30
11.6
28
70
19
122
28
20
5
45
1.72
2040--2089
8
7.1
7
77
22
52
28
26
4
42
1.73
2068--2181
50
2.3
50
82
0
138
24
18
11
45
1.82
2168--2235
8
8.5
8
75
6
66
30
19
4
45
1.70
2167--2235
24
2.9
24
82
0
93
30
20
4
44
1.70
2165--2243
24
3.3
23
74
13
79
27
21
3
46
1.68
5612--5647
15
2.3
15
90
4
54
77
8
0
13
0.98
5610--5648
16
2.5
15
84
12
51
79
7
0
12
0.93
10937--11401
90
5.1
90
87
2
646
31
26
16
25
1.97
10937--11401
182
2.6
180
86
3
648
31
26
16
25
1.97
11388--11954
43
13.3
43
86
2
759
29
26
16
27
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11396--11954
127
4.4
127
87
1
769
29
26
16
27
1.97
11954--12265
54
5.7
54
88
2
428
33
22
14
30
1.93
13482--13519
20
1.9
20
88
0
58
36
13
2
47
1.56
14649--14699
14
3.7
13
82
10
57
39
7
7
45
1.62
17641--17902
67
3.8
67
85
5
285
41
14
19
24
1.88

Tables:   1

The End!