Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008219.1 Corchorus capsularis cultivar CVL-1 contig08240, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58060

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1084--1136
25
2.1
26
96
3
99
33
18
11
35
1.87
3394--3429
2
18.5
2
94
5
65
52
0
0
47
1.00
6458--6508
20
2.7
18
80
16
59
1
3
17
76
1.03
11424--11672
92
2.7
92
97
0
462
25
19
24
30
1.98
12709--12864
80
2.0
80
92
0
258
33
23
13
30
1.93
15922--15996
34
2.3
34
95
4
136
61
21
6
10
1.51
16511--16600
45
2.0
45
82
0
108
52
18
7
21
1.70
19258--19319
32
1.9
32
83
3
79
48
17
25
8
1.75
19647--19688
20
2.0
21
86
4
59
21
38
7
33
1.81
19995--20040
22
2.1
23
88
8
69
15
41
28
15
1.87
35405--35449
21
2.1
22
87
4
65
15
40
8
35
1.79

Tables:   1

The End!