Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000822.1 Corchorus capsularis cultivar CVL-1 contig00822, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 619

Length: 1032
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.34


Found at i:155 original size:13 final size:13

Alignment explanation


    Indices: 137--168  Score: 55
    Period size: 13  Copynumber: 2.5  Consensus size: 13

        127 TGCTATATGA

                         
        137 CCCTCCAACTTGT
          1 CCCTCCAACTTGT

                    *    
        150 CCCTCCAATTTGT
          1 CCCTCCAACTTGT

                  
        163 CCCTCC
          1 CCCTCC

        169 TGATGTGTCA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  13   18  1.00

ACGTcount: A:0.12, C:0.50, G:0.06, T:0.31


Consensus pattern (13 bp):   
CCCTCCAACTTGT

Found at i:833 original size:32 final size:31

Alignment explanation


    Indices: 797--867  Score: 81
    Period size: 32  Copynumber: 2.2  Consensus size: 31

        787 ACTATGGCGC

                                             
        797 GGCGTTTGGATATTTAGACGCCACTAAATA-AG
          1 GGCGTTT-GATATTTAGACGCCACTAAA-AGAG

                     * *          *         
        829 GGCGTCTTGTTCTTTAGACGCCGCTAAAAGAG
          1 GGCGT-TTGATATTTAGACGCCACTAAAAGAG

                   
        861 GGCGTTT
          1 GGCGTTT

        868 TCTTTTCATG


Statistics
Matches: 34,  Mismatches: 3, Indels: 5
        0.81            0.07        0.12

Matches are distributed among these distances:
  31    3  0.09
  32   29  0.85
  33    2  0.06

ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30


Consensus pattern (31 bp):   
GGCGTTTGATATTTAGACGCCACTAAAAGAG
Done.