Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008223.1 Corchorus capsularis cultivar CVL-1 contig08244, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18564

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2210--2343
68
2.0
69
87
1
198
26
36
7
29
1.84
7345--7369
1
25.0
1
100
0
50
0
0
0
100
0.00
10166--10637
22
21.6
22
68
12
188
36
14
10
38
1.80
10473--10557
23
3.7
23
84
1
100
37
14
7
41
1.73
10434--10557
45
2.7
43
77
12
124
37
13
8
39
1.76
10692--10742
19
2.6
20
87
6
77
25
15
11
47
1.80
10848--10971
22
5.6
22
74
9
92
33
14
10
41
1.80
10823--10973
44
3.4
44
76
1
160
32
14
9
43
1.79
11057--11111
22
2.5
23
82
11
71
38
16
5
40
1.72
11222--11383
22
7.3
22
78
6
105
38
18
10
32
1.85
11549--11591
19
2.2
20
84
16
54
62
0
6
30
1.21

Tables:   1

The End!