Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008226.1 Corchorus capsularis cultivar CVL-1 contig08247, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50584

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28--61
2
17.5
2
93
6
61
50
0
0
50
1.00
357--414
27
2.2
27
84
3
73
36
13
5
44
1.66
2032--2088
8
6.9
8
75
13
53
28
3
22
45
1.69
2683--2749
36
1.9
34
87
6
98
55
8
13
22
1.66
4415--4493
41
1.9
41
97
0
149
43
11
5
40
1.63
4558--4691
68
2.0
68
89
0
205
27
17
14
39
1.90
5147--5408
107
2.5
106
92
2
422
41
9
8
40
1.69
6962--7117
54
2.8
54
83
6
177
39
25
10
24
1.88
8972--9116
65
2.2
67
90
7
224
48
15
21
14
1.80
11472--11614
64
2.2
66
88
8
220
15
18
18
47
1.83
13855--13889
16
2.2
16
100
0
70
11
25
17
45
1.81
21645--21685
2
21.0
2
95
5
75
48
0
0
51
1.00
39420--39522
31
3.3
31
79
0
125
33
26
22
17
1.96

Tables:   1

The End!