Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008227.1 Corchorus capsularis cultivar CVL-1 contig08248, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9126

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1004--1073
27
2.6
27
81
0
86
17
11
22
48
1.79
5021--5378
55
6.6
55
83
7
412
51
6
16
25
1.69
5021--5379
109
3.3
109
85
4
478
51
6
16
25
1.69
5021--5378
164
2.2
161
86
4
488
51
6
16
25
1.69
5414--5510
40
2.5
39
79
12
101
50
7
18
23
1.71
5497--5585
16
5.9
15
69
18
69
55
6
20
17
1.65
5523--5620
16
6.1
16
71
15
85
59
5
20
15
1.55
5533--5659
34
3.6
34
83
9
125
56
3
22
16
1.56
5599--5720
37
3.2
40
80
14
107
49
4
27
19
1.66
5718--5754
17
2.2
17
90
0
56
48
8
13
29
1.71
5791--5836
14
3.4
14
78
3
58
56
4
21
17
1.58
5899--5942
22
2.0
21
82
4
52
52
4
20
22
1.65

Tables:   1

The End!