Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008233.1 Corchorus capsularis cultivar CVL-1 contig08254, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42483

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
367--402
13
2.8
13
91
0
63
66
0
2
30
1.06
3005--3083
28
2.9
27
83
3
86
16
20
24
39
1.92
5732--5767
14
2.5
15
90
9
65
50
5
25
19
1.69
5714--5864
35
4.1
35
79
12
142
49
5
22
22
1.72
5790--5872
21
3.9
21
77
1
94
48
6
24
21
1.72
5678--5819
56
2.5
54
75
10
133
50
7
19
22
1.71
5750--5884
42
3.4
41
77
8
120
48
5
22
22
1.72
6916--7008
46
2.0
46
93
0
159
44
11
8
35
1.72
13888--13933
21
2.3
21
82
17
62
8
36
0
54
1.32
15693--15726
18
1.9
17
94
5
59
50
23
0
26
1.50
16877--16919
21
2.0
21
82
13
52
55
6
2
34
1.39
17179--17254
31
2.5
31
97
0
143
21
17
23
38
1.93
22009--22033
11
2.3
11
100
0
50
40
12
16
32
1.84
23212--23256
22
2.0
22
100
0
90
55
17
4
22
1.60
31563--31602
21
1.9
21
85
10
55
42
20
17
20
1.89
32026--32137
58
1.9
58
92
0
188
44
14
18
22
1.86

Tables:   1

The End!