Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01008238.1 Corchorus capsularis cultivar CVL-1 contig08259, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45574
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Found at i:4373 original size:15 final size:14
Alignment explanation
Indices: 4349--4379 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
4339 TTTGGGTTTT
4349 TTTTTGGGTTTGGG
1 TTTTTGGGTTTGGG
4363 TTTTTGAGGTTTGGG
1 TTTTTG-GGTTTGGG
4378 TT
1 TT
4380 CAGGCGGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.03, C:0.00, G:0.39, T:0.58
Consensus pattern (14 bp):
TTTTTGGGTTTGGG
Found at i:5245 original size:98 final size:99
Alignment explanation
Indices: 5022--5356 Score: 412
Period size: 98 Copynumber: 3.4 Consensus size: 99
5012 ATTAAGGTTT
* * * * *
5022 AGTGATCTAGGGCGGTCCGTCTTCAGTTAATCGATCCAGGGCGATCTCTCTTCAGTGAATTTCGA
1 AGTGATCCAGGGCGGTCCATCTTCAGTTAATTGATCCAGGGTGATCTCTCTTCAGTGAATTTCGG
* * *
5087 TTGAACTAAGATGATCTCTT-TACAGTGAATTTCA
66 TTGATCTAGGGTGATCT-TTCTACAGTGAATTTCA
* * * * *
5121 AGTGA-CCTAGGGCGATCCATCTTCAGTTAATTGATCTAGGGTGCTCTCTCTTTAGTGAATTCCG
1 AGTGATCC-AGGGCGGTCCATCTTCAGTTAATTGATCCAGGGTGATCTCTCTTCAGTGAATTTCG
5185 GTTGATCTAGGGTGATCTTTCTA-AGTGAATTTCA
65 GTTGATCTAGGGTGATCTTTCTACAGTGAATTTCA
* *
5219 AGTGATCCAGGGCGGTCCATCTTCAGTTAATTGATCTAGGGTGATCTTTCTTCAGTGAATTTCGG
1 AGTGATCCAGGGCGGTCCATCTTCAGTTAATTGATCCAGGGTGATCTCTCTTCAGTGAATTTCGG
* *
5284 TTGATCTAGGGTGATCCTTCTATAGTGAATTTCA
66 TTGATCTAGGGTGATCTTTCTACAGTGAATTTCA
* * **
5318 A-TTAACTCAGGGTAGTCCAT-TT-AGTTAATTGATCCAGGG
1 AGTGATC-CAGGGCGGTCCATCTTCAGTTAATTGATCCAGGG
5357 CGGTTCAAAT
Statistics
Matches: 207, Mismatches: 24, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
97 16 0.08
98 97 0.47
99 94 0.45
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (99 bp):
AGTGATCCAGGGCGGTCCATCTTCAGTTAATTGATCCAGGGTGATCTCTCTTCAGTGAATTTCGG
TTGATCTAGGGTGATCTTTCTACAGTGAATTTCA
Found at i:5289 original size:35 final size:35
Alignment explanation
Indices: 5151--5316 Score: 134
Period size: 35 Copynumber: 4.9 Consensus size: 35
5141 CTTCAGTTAA
* * * *
5151 TTGATCTAGGGTGCTCTCTCTTTAGTGAATTCCGG
1 TTGATCTAGGGTGATCTTTCTTCAGTGAATTTCGG
* *
5186 TTGATCTAGGGTGATCTTTC-TAAGTGAATTTCAAG
1 TTGATCTAGGGTGATCTTTCTTCAGTGAATTTC-GG
* * * ** *
5221 -TGATCCAGGGCGGTCCATCTTCAGTTAA------
1 TTGATCTAGGGTGATCTTTCTTCAGTGAATTTCGG
5249 TTGATCTAGGGTGATCTTTCTTCAGTGAATTTCGG
1 TTGATCTAGGGTGATCTTTCTTCAGTGAATTTCGG
*
5284 TTGATCTAGGGTGATCCTTCTAT-AGTGAATTTC
1 TTGATCTAGGGTGATCTTTCT-TCAGTGAATTTC
5317 AATTAACTCA
Statistics
Matches: 102, Mismatches: 19, Indels: 20
0.72 0.13 0.14
Matches are distributed among these distances:
29 22 0.22
34 24 0.24
35 55 0.54
36 1 0.01
ACGTcount: A:0.20, C:0.17, G:0.24, T:0.39
Consensus pattern (35 bp):
TTGATCTAGGGTGATCTTTCTTCAGTGAATTTCGG
Found at i:5330 original size:35 final size:35
Alignment explanation
Indices: 5247--5330 Score: 91
Period size: 35 Copynumber: 2.4 Consensus size: 35
5237 ATCTTCAGTT
* *
5247 AATTGATCTAGGGTGATCTTTCTTCAGTGAATTTC
1 AATTAATCTAGGGTGATCCTTCTTCAGTGAATTTC
** *
5282 GGTTGATCTAGGGTGATCCTTCTAT-AGTGAATTTC
1 AATTAATCTAGGGTGATCCTTCT-TCAGTGAATTTC
5317 AATTAA-CTCAGGGT
1 AATTAATCT-AGGGT
5331 AGTCCATTTA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
34 2 0.05
35 38 0.93
36 1 0.02
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.39
Consensus pattern (35 bp):
AATTAATCTAGGGTGATCCTTCTTCAGTGAATTTC
Found at i:5498 original size:36 final size:36
Alignment explanation
Indices: 5451--5725 Score: 193
Period size: 36 Copynumber: 7.7 Consensus size: 36
5441 TTTATGTCAA
5451 AATGATCGAGGGTGGTCGTTCTTCAGTTCAGTTCGG
1 AATGATCGAGGGTGGTCGTTCTTCAGTTCAGTTCGG
* * * *
5487 AATGATTGAGGGTGGTCGTTCTTCAGTTTATTTCAG
1 AATGATCGAGGGTGGTCGTTCTTCAGTTCAGTTCGG
* * * * * * * *
5523 -TTGACCAAGGTTGATC-TTACTTTAGTT-TGTGGCGG
1 AATGATCGAGGGTGGTCGTT-CTTCAGTTCAGT-TCGG
* * * *
5558 AATGATCGTGGGTGGCCGTTCTTCAATTCAGTCCGG
1 AATGATCGAGGGTGGTCGTTCTTCAGTTCAGTTCGG
* * *
5594 AATGA-CGAGGGTGGTCGTTCTTCAGTTTATTTCAG
1 AATGATCGAGGGTGGTCGTTCTTCAGTTCAGTTCGG
* * * * * * *
5629 -TTGACCTAAGGTGGTCTTTCTTCAGTT-TGTGTCGA
1 AATGATCGAGGGTGGTCGTTCTTCAGTTCAGT-TCGG
* ** **
5664 AATGGTCGAAAGTGGTCGTTCTTCAGTTCAGCCCGG
1 AATGATCGAGGGTGGTCGTTCTTCAGTTCAGTTCGG
*
5700 AATGATCGAGGGTGGTCGTTTTTCAG
1 AATGATCGAGGGTGGTCGTTCTTCAG
5726 CTTATTCCAG
Statistics
Matches: 175, Mismatches: 55, Indels: 18
0.71 0.22 0.07
Matches are distributed among these distances:
34 7 0.04
35 63 0.36
36 100 0.57
37 5 0.03
ACGTcount: A:0.18, C:0.16, G:0.30, T:0.36
Consensus pattern (36 bp):
AATGATCGAGGGTGGTCGTTCTTCAGTTCAGTTCGG
Found at i:5512 original size:31 final size:31
Alignment explanation
Indices: 5415--5514 Score: 85
Period size: 36 Copynumber: 3.0 Consensus size: 31
5405 TCAATTTATG
* *
5415 TCGGAACGATTCGAGGGTGGTCGTTCTTTA-T
1 TCGGAATGATT-GAGGGTGGTCGTTCTTCAGT
** *
5446 GTCAAAATGATCGAGGGTGGTCGTTCTTCAGTTCAGT
1 -TCGGAATGATTGAGGGTGGTCG---TTC--TTCAGT
5483 TCGGAATGATTGAGGGTGGTCGTTCTTCAGT
1 TCGGAATGATTGAGGGTGGTCGTTCTTCAGT
5514 T
1 T
5515 TATTTCAGTT
Statistics
Matches: 54, Mismatches: 8, Indels: 13
0.72 0.11 0.17
Matches are distributed among these distances:
31 18 0.33
32 7 0.13
33 3 0.06
34 3 0.06
36 22 0.41
37 1 0.02
ACGTcount: A:0.18, C:0.15, G:0.32, T:0.35
Consensus pattern (31 bp):
TCGGAATGATTGAGGGTGGTCGTTCTTCAGT
Found at i:5658 original size:106 final size:107
Alignment explanation
Indices: 5450--5755 Score: 427
Period size: 106 Copynumber: 2.9 Consensus size: 107
5440 CTTTATGTCA
* *
5450 AAATGATCGAGGGTGGTCGTTCTTCAGTTCAGTTCGGAATGATTGAGGGTGGTCGTTCTTCAGTT
1 AAATGATCGAGGGTGGTCGTTCTTCAGTTCAGTCCGGAATGATCGAGGGTGGTCGTTCTTCAGTT
* * *
5515 TATTTCAGTTGACC-AAGGTTGATCTTACTTTAGTTTGTGGCG
66 TATTTCAGTTGACCTAAGG-TGGTCTTTCTTCAGTTTGTGGCG
* * * *
5557 GAATGATCGTGGGTGGCCGTTCTTCAATTCAGTCCGGAATGA-CGAGGGTGGTCGTTCTTCAGTT
1 AAATGATCGAGGGTGGTCGTTCTTCAGTTCAGTCCGGAATGATCGAGGGTGGTCGTTCTTCAGTT
*
5621 TATTTCAGTTGACCTAAGGTGGTCTTTCTTCAGTTTGTGTCG
66 TATTTCAGTTGACCTAAGGTGGTCTTTCTTCAGTTTGTGGCG
* ** * * *
5663 AAATGGTCGAAAGTGGTCGTTCTTCAGTTCAGCCCGGAATGATCGAGGGTGGTCGTTTTTCAGCT
1 AAATGATCGAGGGTGGTCGTTCTTCAGTTCAGTCCGGAATGATCGAGGGTGGTCGTTCTTCAGTT
* *
5728 TATTCCAGTTGACCTAGGGTGGTCTTTC
66 TATTTCAGTTGACCTAAGGTGGTCTTTC
5756 CCCAATTTAT
Statistics
Matches: 175, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
106 88 0.50
107 87 0.50
ACGTcount: A:0.18, C:0.17, G:0.29, T:0.36
Consensus pattern (107 bp):
AAATGATCGAGGGTGGTCGTTCTTCAGTTCAGTCCGGAATGATCGAGGGTGGTCGTTCTTCAGTT
TATTTCAGTTGACCTAAGGTGGTCTTTCTTCAGTTTGTGGCG
Found at i:5942 original size:102 final size:102
Alignment explanation
Indices: 5700--5978 Score: 317
Period size: 102 Copynumber: 2.7 Consensus size: 102
5690 TTCAGCCCGG
* * * * * * * * *
5700 AATGATCGAGGGTGGTCGTTTTTCAGCTTATTCCAGTTGACCTAGGGTGGTCTTTCCCCAATTTA
1 AATGATCCAGGGTGGTCGTTATTCAGCTTATTTC-GAT--CC-AGGGCGATCATTCTCCAGTTTA
* * * * *
5765 TGTCTATTTGGTCCAGGGTCGTCAGTTTTTTATTGCATTTT
62 TGTCGATTTGATCCAGGATCGTCAGTTTTTCAATGCATTTT
*
5806 AATTGATCCAGGGTGGTCGTTATTCAGTTTATTTCGATCCAGGGCGATCATTCTCCAGTTTATGT
1 AA-TGATCCAGGGTGGTCGTTATTCAGCTTATTTCGATCCAGGGCGATCATTCTCCAGTTTATGT
*
5871 CGATTTTATCCAGGAT-GATCAGTTTTTCAATGCATTTT
65 CGATTTGATCCAGGATCG-TCAGTTTTTCAATGCATTTT
* * * *
5909 AATGATCTAGGGTGGTCGTTCTTCAGCTTATTTCGATCCAGGGCGATCATTCTCCAGCTTATGCC
1 AATGATCCAGGGTGGTCGTTATTCAGCTTATTTCGATCCAGGGCGATCATTCTCCAGTTTATGTC
5974 GATTT
66 GATTT
5979 AATTTAAATG
Statistics
Matches: 150, Mismatches: 21, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
102 64 0.43
103 52 0.35
104 2 0.01
106 4 0.03
107 28 0.19
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.40
Consensus pattern (102 bp):
AATGATCCAGGGTGGTCGTTATTCAGCTTATTTCGATCCAGGGCGATCATTCTCCAGTTTATGTC
GATTTGATCCAGGATCGTCAGTTTTTCAATGCATTTT
Found at i:13297 original size:21 final size:21
Alignment explanation
Indices: 13271--13312 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
13261 TAGTTTTTCA
13271 GAAATTTTCTAACAGCTTCTC
1 GAAATTTTCTAACAGCTTCTC
*
13292 GAAATTTTGTAACAGCTTCTC
1 GAAATTTTCTAACAGCTTCTC
13313 CATAGATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (21 bp):
GAAATTTTCTAACAGCTTCTC
Found at i:18875 original size:42 final size:42
Alignment explanation
Indices: 18785--18887 Score: 136
Period size: 42 Copynumber: 2.5 Consensus size: 42
18775 CGCATGGAGT
** * *
18785 AACCGGCCATGACCGGCCAACGCATGGAGCAACGCATGGGGC
1 AACCGGCCACAACCGGCCAACGCATGGAGCAACGCACGGGCC
*
18827 AACCGGCCACAACCGGCCAACGCATGG-GACATCGCACGGGCC
1 AACCGGCCACAACCGGCCAACGCATGGAG-CAACGCACGGGCC
*
18869 ATCCGGCCACAACCGGCCA
1 AACCGGCCACAACCGGCCA
18888 CAACCGGCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
41 1 0.02
42 53 0.98
ACGTcount: A:0.26, C:0.39, G:0.29, T:0.06
Consensus pattern (42 bp):
AACCGGCCACAACCGGCCAACGCATGGAGCAACGCACGGGCC
Found at i:18886 original size:10 final size:10
Alignment explanation
Indices: 18871--18897 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
18861 CACGGGCCAT
18871 CCGGCCACAA
1 CCGGCCACAA
18881 CCGGCCACAA
1 CCGGCCACAA
18891 CCGGCCA
1 CCGGCCA
18898 TTCGATCCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.26, C:0.52, G:0.22, T:0.00
Consensus pattern (10 bp):
CCGGCCACAA
Found at i:24510 original size:32 final size:33
Alignment explanation
Indices: 24474--24565 Score: 98
Period size: 33 Copynumber: 2.8 Consensus size: 33
24464 GGCCATTGCC
*
24474 TGGAGAAGC-CGCGCAAC-ACTGGCCACATGACT
1 TGGAGAAGCTCG-GCAACAACCGGCCACATGACT
*
24506 TGGAGATGCTCGGCAACAACCGGCCACATGACT
1 TGGAGAAGCTCGGCAACAACCGGCCACATGACT
** * * *
24539 TGGCCATGCCCGGCCACAACCGGCCAC
1 TGGAGAAGCTCGGCAACAACCGGCCAC
24566 TTGATCCTTT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
32 13 0.25
33 39 0.75
ACGTcount: A:0.25, C:0.36, G:0.27, T:0.12
Consensus pattern (33 bp):
TGGAGAAGCTCGGCAACAACCGGCCACATGACT
Found at i:24536 original size:33 final size:33
Alignment explanation
Indices: 24486--24565 Score: 108
Period size: 33 Copynumber: 2.5 Consensus size: 33
24476 GAGAAGCCGC
* * *
24486 GCAAC-ACTGGCCACATGACTTGGAGATGCTCG
1 GCAACAACCGGCCACATGACTTGGACATGCCCG
*
24518 GCAACAACCGGCCACATGACTTGGCCATGCCCG
1 GCAACAACCGGCCACATGACTTGGACATGCCCG
*
24551 GCCACAACCGGCCAC
1 GCAACAACCGGCCAC
24566 TTGATCCTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
32 5 0.12
33 37 0.88
ACGTcount: A:0.25, C:0.38, G:0.25, T:0.12
Consensus pattern (33 bp):
GCAACAACCGGCCACATGACTTGGACATGCCCG
Found at i:26232 original size:33 final size:33
Alignment explanation
Indices: 26178--26271 Score: 100
Period size: 33 Copynumber: 2.8 Consensus size: 33
26168 TGGCCGGTTG
* *
26178 TGGCCGGACATGC-CCATGTCGCATGGCCAGTGT
1 TGGCCGGGCAT-CTCCAAGTCGCATGGCCAGTGT
* * **
26211 TGGCCGGGCATCTCCGAGTCGCGTGGCTGGTGT
1 TGGCCGGGCATCTCCAAGTCGCATGGCCAGTGT
**
26244 TGGCCGGGTTTCTCCAAGTCGCATGGCC
1 TGGCCGGGCATCTCCAAGTCGCATGGCC
26272 GCTCACTAGT
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
32 1 0.02
33 48 0.98
ACGTcount: A:0.11, C:0.30, G:0.36, T:0.23
Consensus pattern (33 bp):
TGGCCGGGCATCTCCAAGTCGCATGGCCAGTGT
Found at i:27353 original size:12 final size:12
Alignment explanation
Indices: 27333--27372 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
27323 CATGATTGGC
27333 CAACGCATGGAG
1 CAACGCATGGAG
*
27345 CATCGCATGGAG
1 CAACGCATGGAG
*
27357 CAACGCATGGGG
1 CAACGCATGGAG
27369 CAAC
1 CAAC
27373 CGGCCACAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.30, C:0.28, G:0.33, T:0.10
Consensus pattern (12 bp):
CAACGCATGGAG
Found at i:30612 original size:12 final size:12
Alignment explanation
Indices: 30591--30621 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
30581 CTATATTACA
30591 ATGC-AAACTAT
1 ATGCAAAACTAT
30602 ATGCAAAACTAT
1 ATGCAAAACTAT
30614 ATGCAAAA
1 ATGCAAAA
30622 TGAAAAAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.21
12 15 0.79
ACGTcount: A:0.52, C:0.16, G:0.10, T:0.23
Consensus pattern (12 bp):
ATGCAAAACTAT
Found at i:39054 original size:39 final size:38
Alignment explanation
Indices: 39004--39127 Score: 129
Period size: 39 Copynumber: 3.4 Consensus size: 38
38994 CTTGATCCAG
39004 GGTAATTAAGAAAAGTGAGCATAGTCAATGTCTTAATTT
1 GGTAATTAAGAAAAGT-AGCATAGTCAATGTCTTAATTT
* * *
39043 GGTAATTAAG-AAA--AGCAAAGTCTTAT-T-TCAA---
1 GGTAATTAAGAAAAGTAGCATAGTC-AATGTCTTAATTT
*
39074 GGTAATTAAGAAAAGTAAGCATAGTCAAGGTCTTAATTT
1 GGTAATTAAGAAAAGT-AGCATAGTCAATGTCTTAATTT
39113 GGTAATTAAGAAAAG
1 GGTAATTAAGAAAAG
39128 CAAAGTCTTA
Statistics
Matches: 68, Mismatches: 7, Indels: 20
0.72 0.07 0.21
Matches are distributed among these distances:
31 10 0.15
32 3 0.04
34 4 0.06
35 18 0.26
36 5 0.07
38 3 0.04
39 25 0.37
ACGTcount: A:0.43, C:0.07, G:0.20, T:0.30
Consensus pattern (38 bp):
GGTAATTAAGAAAAGTAGCATAGTCAATGTCTTAATTT
Found at i:39150 original size:70 final size:71
Alignment explanation
Indices: 38812--39153 Score: 400
Period size: 71 Copynumber: 4.8 Consensus size: 71
38802 AAAAGAACAC
* * * * *
38812 AGTCAAGGTCTTAATTAAGTTAATTAAGAGAAGTTAAGTCTTAATTCTGGGTAATCAAGAAAAGA
1 AGTCAAGGTCTTAATTAAGGTAATTAAGAAAAGTAAAGTCTTAATTCAGGGTAATTAAGAAAAGA
* *
38877 AAGTAG
66 AAGCAT
* * * *
38883 AGTCAAGGTCTTAATTAAGTTAATTAAGAAAAGTAATGTCTTAATTAAGGGTAATCAAGAAAAGA
1 AGTCAAGGTCTTAATTAAGGTAATTAAGAAAAGTAAAGTCTTAATTCAGGGTAATTAAGAAAAGA
*
38948 AAGTAT
66 AAGCAT
* * * *
38954 AGTCAAGGTCTTAATTAAGGTAATTAAGAACAGTTAGAGTCTTGATCCAGGGTAATTAAGAAAAG
1 AGTCAAGGTCTTAATTAAGGTAATTAAGAAAAG-TAAAGTCTTAATTCAGGGTAATTAAGAAAAG
**
39019 TGAGCAT
65 AAAGCAT
* * * * * *
39026 AGTCAATGTCTTAATT-TGGTAATTAAGAAAAGCAAAGTCTTATTTCAAGGTAATTAAGAAAAGT
1 AGTCAAGGTCTTAATTAAGGTAATTAAGAAAAGTAAAGTCTTAATTCAGGGTAATTAAGAAAAGA
39090 AAGCAT
66 AAGCAT
* * * **
39096 AGTCAAGGTCTTAATT-TGGTAATTAAGAAAAGCAAAGTCTTAATCCAGAATAATTAAG
1 AGTCAAGGTCTTAATTAAGGTAATTAAGAAAAGTAAAGTCTTAATTCAGGGTAATTAAG
39154 CAGAGTAAAC
Statistics
Matches: 237, Mismatches: 33, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
70 83 0.35
71 110 0.46
72 44 0.19
ACGTcount: A:0.43, C:0.08, G:0.20, T:0.30
Consensus pattern (71 bp):
AGTCAAGGTCTTAATTAAGGTAATTAAGAAAAGTAAAGTCTTAATTCAGGGTAATTAAGAAAAGA
AAGCAT
Found at i:39192 original size:142 final size:142
Alignment explanation
Indices: 38812--39194 Score: 344
Period size: 142 Copynumber: 2.7 Consensus size: 142
38802 AAAAGAACAC
* * * * * ** *
38812 AGTCAAGGTCTTAATTAAGTTAATTAAGAGAAGT-TAAGTCTTAATTCTGGGTAATCAAGAAAAG
1 AGTCAAGGTCTTAATTAAGGTAATTAAGAAAAGTCAAAGTCTTAATCCAGAATAATTAAGAAAAG
* * * * * * *
38876 -AAAGTAGAGTCAAGGTCTTAATTAAGTTAATTAAGAAAAGTAATGTCTTAATTAAGGGTAATCA
66 TAAA-CACAGTCAAGGGCTTAATTTAG-AAATTAAGAAAAGCAAAGTCTTAATTAAGGGTAATCA
*
38940 AGAAAAGAAAGTAT
129 AGAAAAGAAAGCAT
* * * * **
38954 AGTCAAGGTCTTAATTAAGGTAATTAAGAACAGTTAGAGTCTTGATCCAGGGTAATTAAGAAAAG
1 AGTCAAGGTCTTAATTAAGGTAATTAAGAAAAGTCAAAGTCTTAATCCAGAATAATTAAGAAAAG
* * * * * * * * *
39019 TGAGCATAGTCAATGTCTTAATTTGGTAATTAAGAAAAGCAAAGTCTTATTTCAA-GGTAATTAA
66 TAAACACAGTCAAGGGCTTAATTTAGAAATTAAGAAAAGCAAAGTCTTAATT-AAGGGTAATCAA
*
39083 GAAAAGTAAGCAT
130 GAAAAGAAAGCAT
* * *
39096 AGTCAAGGTCTTAATT-TGGTAATTAAGAAAAG-CAAAGTCTTAATCCAGAATAATTAAGCAGAG
1 AGTCAAGGTCTTAATTAAGGTAATTAAGAAAAGTCAAAGTCTTAATCCAGAATAATTAAGAAAAG
***
39159 TAAACACAGTTGGGGGCTTAATTCATAGAAATTAAG
66 TAAACACAGTCAAGGGCTTAATT--TAGAAATTAAG
39195 TTAAAAGACT
Statistics
Matches: 195, Mismatches: 41, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
140 39 0.20
141 14 0.07
142 98 0.50
143 43 0.22
144 1 0.01
ACGTcount: A:0.42, C:0.09, G:0.20, T:0.29
Consensus pattern (142 bp):
AGTCAAGGTCTTAATTAAGGTAATTAAGAAAAGTCAAAGTCTTAATCCAGAATAATTAAGAAAAG
TAAACACAGTCAAGGGCTTAATTTAGAAATTAAGAAAAGCAAAGTCTTAATTAAGGGTAATCAAG
AAAAGAAAGCAT
Found at i:39207 original size:28 final size:27
Alignment explanation
Indices: 39175--39228 Score: 81
Period size: 28 Copynumber: 2.0 Consensus size: 27
39165 CAGTTGGGGG
*
39175 CTTAATTCATAGAAATTAAGTTAAAAGA
1 CTTAATTCAGAGAAATTAAG-TAAAAGA
*
39203 CTTAATTCAGGGAAATTAAGTAAAAG
1 CTTAATTCAGAGAAATTAAGTAAAAG
39229 CAGTAAAAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 6 0.25
28 18 0.75
ACGTcount: A:0.48, C:0.07, G:0.15, T:0.30
Consensus pattern (27 bp):
CTTAATTCAGAGAAATTAAGTAAAAGA
Found at i:39245 original size:37 final size:37
Alignment explanation
Indices: 39196--39414 Score: 264
Period size: 37 Copynumber: 6.0 Consensus size: 37
39186 GAAATTAAGT
*
39196 TAAAA-GACTTAATTCAGGGAAATTAAGTAAAAGCAG
1 TAAAAGGACTTAATTCAGGGTAATTAAGTAAAAGCAG
* *
39232 TAAAAGGACTTAATTGAGGGAAATTAAGTAAAAGCAG
1 TAAAAGGACTTAATTCAGGGTAATTAAGTAAAAGCAG
* * * *
39269 TTAAAA-GACTTAGTTTAGGTTAATTAAATAAAAGCAG
1 -TAAAAGGACTTAATTCAGGGTAATTAAGTAAAAGCAG
** *
39306 TTGAAGGACTTAATTCAGGGTAATTAACTAAAAGCAG
1 TAAAAGGACTTAATTCAGGGTAATTAAGTAAAAGCAG
* *
39343 TTAAAGGACTTAATTCAGGGTAATTAAGTAAAATCAG
1 TAAAAGGACTTAATTCAGGGTAATTAAGTAAAAGCAG
* * * *
39380 T-CAAGGACTTAATCCAAGGTAATTGAGTAAAAGCA
1 TAAAAGGACTTAATTCAGGGTAATTAAGTAAAAGCA
39415 TGCGCAGACT
Statistics
Matches: 160, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
36 37 0.23
37 118 0.74
38 5 0.03
ACGTcount: A:0.45, C:0.09, G:0.20, T:0.26
Consensus pattern (37 bp):
TAAAAGGACTTAATTCAGGGTAATTAAGTAAAAGCAG
Found at i:39573 original size:37 final size:37
Alignment explanation
Indices: 39524--40274 Score: 1049
Period size: 37 Copynumber: 20.8 Consensus size: 37
39514 AACTTAACCC
39524 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
1 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
* *
39561 AAGGAAATTAAGTAGAGTTAAGGACTTAATTCCAAGG
1 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
*
39598 AAGGGAATTAAGTAGAGTTAAGGACTTGATTTCAAGG
1 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
*
39635 AAGGGAATTAAGTAGAGTTAAGGACTTAATTGCAAGG
1 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
* *
39672 AAGGAAATTAAGTAGAGTTAAGGACTTAATTCCAAGG
1 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
*
39709 AAGGGAATTAAGTAGAGTTAAGGACTTGATTTCAAGG
1 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
* * *
39746 AAGGAAATTAAGT--AG---AGGACTTGATTCCAAGG
1 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
39778 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
1 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
* * *
39815 AATGAAATTAAGTAGAGTTAAGGACTTAATTCCAAGG
1 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
39852 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
1 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
39889 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
1 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
* * *
39926 AAGGAAATTAAGT--AG---AGGACTTGATTCCAAGG
1 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
*
39958 GAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
1 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
* * *
39995 AAGGAAATTAAGTAGAGTTACGGACTTAATTCCAAGG
1 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
*
40032 AAGGGAATTAAGTAGAGTTATGGACTTAATTTCAAGG
1 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
* * *
40069 AAGGAAATTAAGT--AG---AGGACTTGATTCCAAGG
1 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
40101 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
1 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
* *
40138 AAGGGAATTAAGTAGAGTTAAGGACTTAATTCCAAAG
1 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
* *
40175 AAGGGAATTAAGT--AG---AGGACTTGATTCCAAGG
1 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
* *
40207 AAGGGAATTAGGTAGAGTTAAGGATTTAATTTCAAGG
1 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
* * *
40244 AAGGAAATTAAGTCA-AGTCAGGGACTTAATT
1 AAGGGAATTAAGT-AGAGTTAAGGACTTAATT
40275 CAGGGTAATT
Statistics
Matches: 636, Mismatches: 57, Indels: 42
0.87 0.08 0.06
Matches are distributed among these distances:
32 107 0.17
34 8 0.01
35 8 0.01
37 512 0.81
38 1 0.00
ACGTcount: A:0.40, C:0.07, G:0.27, T:0.26
Consensus pattern (37 bp):
AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
Found at i:39828 original size:180 final size:182
Alignment explanation
Indices: 39524--40274 Score: 1100
Period size: 180 Copynumber: 4.2 Consensus size: 182
39514 AACTTAACCC
39524 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGGAAGGAAATTAAGTAGAGTTAAGGACTTA
1 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGGAAGGAAATTAAGTA-AG-T-AGGACTTA
* *
39589 ATTCCAAGGAAGGGAATTAAGTAGAGTTAAGGACTTGATTTCAAGGAAGGGAATTAAGTAGAGTT
63 ATTCCAAGGAAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGGAAGGAAATTAAGTAGAGTT
* * *
39654 AAGGACTTAATTGCAAGGAAGGAAATTAAGTAGAGTTAAGGACTTAATTCCAAGG
128 AAGGACTTAATTCCAAGGAAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
* *
39709 AAGGGAATTAAGTAGAGTTAAGGACTTGATTTCAAGGAAGGAAATTAAGT-AG-AGGACTTGATT
1 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGGAAGGAAATTAAGTAAGTAGGACTTAATT
*
39772 CCAAGGAAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGGAATGAAATTAAGTAGAGTTAAG
66 CCAAGGAAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGGAAGGAAATTAAGTAGAGTTAAG
39837 GACTTAATTCCAAGGAAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
131 GACTTAATTCCAAGGAAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
*
39889 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGGAAGGAAATTAAGT-AG-AGGACTTGATT
1 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGGAAGGAAATTAAGTAAGTAGGACTTAATT
* *
39952 CCAAGGGAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGGAAGGAAATTAAGTAGAGTTACG
66 CCAAGGAAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGGAAGGAAATTAAGTAGAGTTAAG
*
40017 GACTTAATTCCAAGGAAGGGAATTAAGTAGAGTTATGGACTTAATTTCAAGG
131 GACTTAATTCCAAGGAAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
* * * *
40069 AAGGAAATTAAGT--AG---AGGACTTGATTCCAAGGAAGGGAATTAAGTAGAGTTAAGGACTTA
1 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGGAAGGAAATTAAGTA-AG-T-AGGACTTA
* * * *
40129 ATTTCAAGGAAGGGAATTAAGTAGAGTTAAGGACTTAATTCCAAAGAAGGGAATTAAGT--AG--
63 ATTCCAAGGAAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGGAAGGAAATTAAGTAGAGTT
* * *
40190 -AGGACTTGATTCCAAGGAAGGGAATTAGGTAGAGTTAAGGATTTAATTTCAAGG
128 AAGGACTTAATTCCAAGGAAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
* * *
40244 AAGGAAATTAAGTCA-AGTCAGGGACTTAATT
1 AAGGGAATTAAGT-AGAGTTAAGGACTTAATT
40275 CAGGGTAATT
Statistics
Matches: 526, Mismatches: 30, Indels: 25
0.91 0.05 0.04
Matches are distributed among these distances:
175 89 0.17
177 4 0.01
178 4 0.01
180 378 0.72
183 2 0.00
185 49 0.09
ACGTcount: A:0.40, C:0.07, G:0.27, T:0.26
Consensus pattern (182 bp):
AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGGAAGGAAATTAAGTAAGTAGGACTTAATT
CCAAGGAAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGGAAGGAAATTAAGTAGAGTTAAG
GACTTAATTCCAAGGAAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGG
Found at i:39841 original size:143 final size:145
Alignment explanation
Indices: 39524--40275 Score: 1030
Period size: 143 Copynumber: 5.2 Consensus size: 145
39514 AACTTAACCC
* * *
39524 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGGAAGGAAATTAAGTAGAGTTAAGGACTTA
1 AAGGAAATTAAGTAGAGTTAAGGACTTAATTCCAAGGAAGGGAATTAAGTAGAGTTAAGGACTTA
39589 ATTCCAAGGAAGGGAATTAAGTAGAGTTAAGGACTTGATTTCAAGGAAGGGAATTAAGTAGAGTT
66 ATTCCAAGGAAGGGAATTAAGTA-AG-T-AGGACTTGATTTCAAGGAAGGGAATTAAGTAGAGTT
*
39654 AAGGACTTAATTGCAAGG
128 AAGGACTTAATTCCAAGG
*
39672 AAGGAAATTAAGTAGAGTTAAGGACTTAATTCCAAGGAAGGGAATTAAGTAGAGTTAAGGACTTG
1 AAGGAAATTAAGTAGAGTTAAGGACTTAATTCCAAGGAAGGGAATTAAGTAGAGTTAAGGACTTA
* * *
39737 ATTTCAAGGAAGGAAATTAAGT-AG-AGGACTTGATTCCAAGGAAGGGAATTAAGTAGAGTTAAG
66 ATTCCAAGGAAGGGAATTAAGTAAGTAGGACTTGATTTCAAGGAAGGGAATTAAGTAGAGTTAAG
*
39800 GACTTAATTTCAAGG
131 GACTTAATTCCAAGG
*
39815 AATGAAATTAAGTAGAGTTAAGGACTTAATTCCAAGGAAGGGAATTAAGTAGAGTTAAGGACTTA
1 AAGGAAATTAAGTAGAGTTAAGGACTTAATTCCAAGGAAGGGAATTAAGTAGAGTTAAGGACTTA
* * *
39880 ATTTCAAGGAAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGGAAGGAAATTAAGT--AG--
66 ATTCCAAGGAAGGGAATTAAGTA-AG-T-AGGACTTGATTTCAAGGAAGGGAATTAAGTAGAGTT
*
39941 -AGGACTTGATTCCAAGG
128 AAGGACTTAATTCCAAGG
* * * * *
39958 GAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGGAAGGAAATTAAGTAGAGTTACGGACTTA
1 AAGGAAATTAAGTAGAGTTAAGGACTTAATTCCAAGGAAGGGAATTAAGTAGAGTTAAGGACTTA
* *
40023 ATTCCAAGGAAGGGAATTAAGTAGAGTTATGGACTTAATTTCAAGGAAGGAAATTAAGT--AG--
66 ATTCCAAGGAAGGGAATTAAGTA-AG-TA-GGACTTGATTTCAAGGAAGGGAATTAAGTAGAGTT
*
40084 -AGGACTTGATTCCAAGG
128 AAGGACTTAATTCCAAGG
* *
40101 AAGGGAATTAAGTAGAGTTAAGGACTTAATTTCAAGGAAGGGAATTAAGTAGAGTTAAGGACTTA
1 AAGGAAATTAAGTAGAGTTAAGGACTTAATTCCAAGGAAGGGAATTAAGTAGAGTTAAGGACTTA
* * *
40166 ATTCCAAAGAAGGGAATTAAGT-AG-AGGACTTGATTCCAAGGAAGGGAATTAGGTAGAGTTAAG
66 ATTCCAAGGAAGGGAATTAAGTAAGTAGGACTTGATTTCAAGGAAGGGAATTAAGTAGAGTTAAG
* *
40229 GATTTAATTTCAAGG
131 GACTTAATTCCAAGG
* *
40244 AAGGAAATTAAGTCA-AGTCAGGGACTTAATTC
1 AAGGAAATTAAGT-AGAGTTAAGGACTTAATTC
40276 AGGGTAATTA
Statistics
Matches: 554, Mismatches: 38, Indels: 29
0.89 0.06 0.05
Matches are distributed among these distances:
138 25 0.05
139 1 0.00
140 2 0.00
141 2 0.00
142 1 0.00
143 408 0.74
144 1 0.00
145 2 0.00
146 4 0.01
148 108 0.19
ACGTcount: A:0.40, C:0.07, G:0.27, T:0.26
Consensus pattern (145 bp):
AAGGAAATTAAGTAGAGTTAAGGACTTAATTCCAAGGAAGGGAATTAAGTAGAGTTAAGGACTTA
ATTCCAAGGAAGGGAATTAAGTAAGTAGGACTTGATTTCAAGGAAGGGAATTAAGTAGAGTTAAG
GACTTAATTCCAAGG
Found at i:39874 original size:19 final size:19
Alignment explanation
Indices: 39852--39911 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
39842 AATTCCAAGG
39852 AAGGGAATTAAGTAGAGTT
1 AAGGGAATTAAGTAGAGTT
* * *
39871 AA-GGACTTAATTTCA-AG-G
1 AAGGGAATTAA-GT-AGAGTT
39889 AAGGGAATTAAGTAGAGTT
1 AAGGGAATTAAGTAGAGTT
39908 AAGG
1 AAGG
39912 ACTTAATTTC
Statistics
Matches: 30, Mismatches: 6, Indels: 10
0.65 0.13 0.22
Matches are distributed among these distances:
17 1 0.03
18 12 0.40
19 16 0.53
20 1 0.03
ACGTcount: A:0.42, C:0.03, G:0.30, T:0.25
Consensus pattern (19 bp):
AAGGGAATTAAGTAGAGTT
Found at i:39892 original size:18 final size:18
Alignment explanation
Indices: 39871--39930 Score: 52
Period size: 18 Copynumber: 3.3 Consensus size: 18
39861 AAGTAGAGTT
39871 AAGGACTTAATTTCAAGG
1 AAGGACTTAATTTCAAGG
* * *
39889 AAGGGAATTAA-GT-AGAGTT
1 AA-GGACTTAATTTCA-AG-G
39908 AAGGACTTAATTTCAAGG
1 AAGGACTTAATTTCAAGG
39926 AAGGA
1 AAGGA
39931 AATTAAGTAG
Statistics
Matches: 31, Mismatches: 6, Indels: 10
0.66 0.13 0.21
Matches are distributed among these distances:
17 1 0.03
18 17 0.55
19 12 0.39
20 1 0.03
ACGTcount: A:0.42, C:0.07, G:0.27, T:0.25
Consensus pattern (18 bp):
AAGGACTTAATTTCAAGG
Found at i:40160 original size:19 final size:19
Alignment explanation
Indices: 40101--40160 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
40091 GATTCCAAGG
40101 AAGGGAATTAAGTAGAGTT
1 AAGGGAATTAAGTAGAGTT
* * *
40120 AA-GGACTTAATTTCA-AG-G
1 AAGGGAATTAA-GT-AGAGTT
40138 AAGGGAATTAAGTAGAGTT
1 AAGGGAATTAAGTAGAGTT
40157 AAGG
1 AAGG
40161 ACTTAATTCC
Statistics
Matches: 30, Mismatches: 6, Indels: 10
0.65 0.13 0.22
Matches are distributed among these distances:
17 1 0.03
18 12 0.40
19 16 0.53
20 1 0.03
ACGTcount: A:0.42, C:0.03, G:0.30, T:0.25
Consensus pattern (19 bp):
AAGGGAATTAAGTAGAGTT
Found at i:40373 original size:36 final size:36
Alignment explanation
Indices: 40263--40373 Score: 168
Period size: 36 Copynumber: 3.1 Consensus size: 36
40253 AAGTCAAGTC
* * *
40263 AGGGACTTAATTCAGGGTAATTAAGTAGCGTGAATAA
1 AGGG-CTTAATTCAGGGTAATTAAGTGGAGTCAATAA
* *
40300 AAGGCTTAATTCAGGGTAATTAAGTGAAGTCAATAA
1 AGGGCTTAATTCAGGGTAATTAAGTGGAGTCAATAA
40336 AGGGCTTAATTCAGGGTAATTAAGTGGAGTCAATAA
1 AGGGCTTAATTCAGGGTAATTAAGTGGAGTCAATAA
40372 AG
1 AG
40374 AAGTTAATCT
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
36 64 0.96
37 3 0.04
ACGTcount: A:0.39, C:0.08, G:0.26, T:0.27
Consensus pattern (36 bp):
AGGGCTTAATTCAGGGTAATTAAGTGGAGTCAATAA
Found at i:42905 original size:12 final size:12
Alignment explanation
Indices: 42890--42923 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
42880 GCCGGTTGAC
42890 CCATGCGTTGCT
1 CCATGCGTTGCT
*
42902 CCATGCGATGCT
1 CCATGCGTTGCT
42914 CCATGCGTTG
1 CCATGCGTTG
42924 GCCGGTCATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.12, C:0.32, G:0.26, T:0.29
Consensus pattern (12 bp):
CCATGCGTTGCT
Found at i:43885 original size:11 final size:12
Alignment explanation
Indices: 43869--43897 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
43859 AGTTAAATCG
43869 AAAAAT-ATAAA
1 AAAAATAATAAA
43880 AAAAATAATAAA
1 AAAAATAATAAA
43892 AAAAAT
1 AAAAAT
43898 CGAGCAGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 6 0.35
12 11 0.65
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (12 bp):
AAAAATAATAAA
Done.