genome.fa.s8240.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008240.1 Corchorus capsularis cultivar CVL-1 contig08261, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52302

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1554--1599	22	2.0	22	83	4	56	26	6	10	56	1.58
6975--7005	16	1.9	16	93	0	53	16	12	6	64	1.47
7241--7290	22	2.2	23	92	7	84	64	8	12	16	1.49
7241--7290	24	2.1	24	92	0	82	64	8	12	16	1.49
8368--8408	15	2.7	15	96	0	73	43	21	26	7	1.79
11324--11355	11	2.9	11	90	0	55	37	0	18	43	1.51
11324--11383	22	2.9	22	76	19	65	41	3	18	36	1.67
11334--11371	19	2.1	18	90	5	58	44	2	21	31	1.66
11452--11625	87	2.0	87	100	0	348	34	9	18	37	1.83
12773--12807	18	2.1	18	89	10	56	17	11	11	60	1.59
12853--12883	16	1.9	16	93	0	53	16	12	6	64	1.47
13041--13395	22	16.1	22	70	6	123	38	7	18	36	1.79
13484--13545	22	2.8	23	83	9	76	38	12	8	40	1.73
13683--13761	22	3.6	22	75	13	81	35	7	15	41	1.75
13677--13766	44	2.0	46	84	6	121	35	7	15	41	1.76
16529--16586	8	7.4	8	83	9	75	86	0	13	0	0.58
16529--16586	24	2.4	25	85	5	84	86	0	13	0	0.58
16529--16580	17	3.2	17	84	7	65	86	0	13	0	0.57
16532--16586	25	2.2	25	87	6	76	85	0	14	0	0.60
22007--22068	30	2.1	30	96	0	115	8	27	27	37	1.85
22710--22784	30	2.5	30	82	4	89	26	29	30	13	1.94
28730--28791	26	2.4	26	94	0	106	43	16	4	35	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31349--31392	11	3.9	11	82	14	54	68	2	29	0	1.02
32141--32384	35	6.9	35	82	6	260	38	10	17	33	1.84
32210--32269	19	3.3	19	68	13	63	36	11	20	31	1.88
32159--32364	71	2.9	70	85	6	249	37	10	18	33	1.85
32141--32384	106	2.3	105	82	3	276	38	10	17	33	1.84
33381--33427	24	2.0	24	86	0	67	14	17	8	59	1.59
35427--35488	20	3.0	20	79	6	63	74	0	20	4	1.00
37483--37549	35	1.9	35	81	6	82	20	16	23	38	1.92
37769--37950	64	2.8	63	79	9	192	20	20	24	34	1.97
38431--38458	14	2.0	14	100	0	56	21	14	14	50	1.78
38648--38686	20	2.0	20	94	0	69	30	10	17	41	1.83
41708--42177	55	8.5	55	90	1	690	50	7	16	25	1.71
41957--42097	21	7.3	20	65	23	54	53	7	14	25	1.66
41708--42177	224	2.1	220	88	2	710	50	7	16	25	1.71
42511--42623	43	2.6	42	83	6	138	56	7	19	16	1.63
42571--42623	21	2.5	22	90	3	81	58	9	16	15	1.62
42640--42757	21	5.5	21	74	17	84	51	6	19	22	1.70
42651--42732	42	2.0	41	88	9	121	54	7	18	19	1.66
46876--46945	3	23.3	3	91	0	113	64	1	2	31	1.17
47087--47232	76	1.9	76	90	0	229	41	9	17	30	1.82
47614--47717	23	4.6	23	72	15	83	77	0	14	6	1.01
47654--47724	31	2.4	30	86	9	92	77	0	18	4	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47732--47833	45	2.3	45	94	1	179	35	8	19	36	1.83
48996--49088	17	5.5	17	79	14	104	77	0	20	2	0.87
48996--49082	11	7.9	11	78	14	83	77	0	20	2	0.89
48985--49100	38	3.0	36	81	15	126	74	0	21	4	0.99
49008--49097	11	8.9	10	73	24	66	76	0	21	2	0.89
49372--49469	51	1.9	51	93	0	169	31	16	15	36	1.90
49888--50541	69	9.6	69	87	2	865	25	29	18	26	1.98
49888--50518	139	4.6	137	86	2	869	25	29	18	26	1.98
49888--50518	207	3.1	207	91	2	963	25	29	18	26	1.98
52095--52132	19	2.1	19	95	5	69	39	5	26	28	1.78

Tables:   1

The End!