Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008241.1 Corchorus capsularis cultivar CVL-1 contig08262, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28903

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4922--4958
10
3.6
10
96
3
65
13
0
0
86
0.57
4924--4958
9
3.8
9
92
3
52
11
0
0
88
0.51
4923--4958
11
3.4
11
92
3
56
11
0
0
88
0.50
5031--5064
8
4.1
8
85
7
50
23
2
14
58
1.50
5980--6080
33
3.1
32
80
5
96
8
26
40
23
1.84
6041--6109
33
2.1
33
86
5
95
10
30
36
23
1.88
6795--6838
23
2.0
23
90
4
72
20
6
6
65
1.39
9350--9426
34
2.1
37
86
11
106
18
20
32
28
1.96
18340--18413
33
2.2
32
83
6
94
28
10
18
41
1.84
20171--20234
33
1.9
33
83
0
83
23
37
29
9
1.86
22807--23015
23
9.1
23
71
20
136
40
2
22
34
1.69
22826--23028
34
6.2
34
83
13
266
39
1
22
35
1.66
22862--22981
57
2.1
57
93
0
204
40
1
21
35
1.63
22796--23015
91
2.4
93
93
1
363
40
2
22
34
1.69
23053--23243
39
5.0
38
72
8
156
32
16
18
32
1.93
23266--23410
40
3.8
38
82
6
177
26
17
20
35
1.94
23266--23409
38
3.7
39
84
7
179
27
17
19
36
1.94
27743--27788
10
4.6
10
89
10
67
82
0
0
17
0.67
27743--27786
9
4.8
9
86
5
61
84
0
0
15
0.63

Tables:   1

The End!