Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008242.1 Corchorus capsularis cultivar CVL-1 contig08263, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19406

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
144--192
20
2.4
20
86
10
64
51
0
4
44
1.20
1190--1224
6
5.8
6
100
0
70
51
0
14
34
1.42
6828--6898
31
2.3
31
85
2
88
28
16
4
50
1.64
6908--6960
19
2.8
19
77
5
54
37
5
0
56
1.23
7010--7094
22
3.9
22
92
0
134
35
14
16
34
1.89
7011--7148
44
3.1
44
81
8
136
34
10
17
37
1.85
6987--7148
22
7.3
22
79
10
107
33
10
18
37
1.85
7262--7317
19
2.9
19
94
0
94
42
10
25
21
1.85
7308--7935
22
28.7
22
68
12
174
38
9
14
37
1.79
7499--7692
23
8.6
23
76
4
144
37
7
15
39
1.76
7499--7692
90
2.2
90
100
0
388
37
7
15
39
1.76
8079--8110
15
2.1
15
100
0
64
43
0
18
37
1.51
12073--12132
29
2.0
30
93
6
104
23
15
16
45
1.85
12599--12643
21
2.1
21
100
0
90
31
8
33
26
1.87
16771--16810
2
21.0
2
87
10
57
52
0
0
47
1.00
18090--18114
6
4.2
6
100
0
50
36
16
16
32
1.90
19351--19379
2
14.5
2
100
0
58
48
0
0
51
1.00

Tables:   1

The End!