Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008244.1 Corchorus capsularis cultivar CVL-1 contig08265, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13667
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34


Found at i:9017 original size:13 final size:13

Alignment explanation


    Indices: 8999--9023  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       8989 CCCAAAAAAA

                         
       8999 TCTTAGCTTCATG
          1 TCTTAGCTTCATG

                        
       9012 TCTTAGCTTCAT
          1 TCTTAGCTTCAT

       9024 TTACTAATTT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.16, C:0.24, G:0.12, T:0.48


Consensus pattern (13 bp):   
TCTTAGCTTCATG

Found at i:9076 original size:44 final size:44

Alignment explanation


    Indices: 9022--9109  Score: 167
    Period size: 44  Copynumber: 2.0  Consensus size: 44

       9012 TCTTAGCTTC

                                                        
       9022 ATTTACTAATTTAATCAACATTGTTGCATTTACATGTCATGTCT
          1 ATTTACTAATTTAATCAACATTGTTGCATTTACATGTCATGTCT

                 *                                      
       9066 ATTTAGTAATTTAATCAACATTGTTGCATTTACATGTCATGTCT
          1 ATTTACTAATTTAATCAACATTGTTGCATTTACATGTCATGTCT

       9110 TATTGCATAG


Statistics
Matches: 43,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  44   43  1.00

ACGTcount: A:0.30, C:0.15, G:0.10, T:0.45


Consensus pattern (44 bp):   
ATTTACTAATTTAATCAACATTGTTGCATTTACATGTCATGTCT

Found at i:9463 original size:32 final size:32

Alignment explanation


    Indices: 9422--9484  Score: 117
    Period size: 32  Copynumber: 2.0  Consensus size: 32

       9412 GATGACCAGC

                                            
       9422 TTCTCTTTTGGATTATCACCCCTTCCCTGTTT
          1 TTCTCTTTTGGATTATCACCCCTTCCCTGTTT

                                *          
       9454 TTCTCTTTTGGATTATCACCGCTTCCCTGTT
          1 TTCTCTTTTGGATTATCACCCCTTCCCTGTT

       9485 CTGGTCCCAG


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  32   30  1.00

ACGTcount: A:0.10, C:0.30, G:0.11, T:0.49


Consensus pattern (32 bp):   
TTCTCTTTTGGATTATCACCCCTTCCCTGTTT
Done.