Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008247.1 Corchorus capsularis cultivar CVL-1 contig08268, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12189
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30


Found at i:5535 original size:15 final size:16

Alignment explanation


    Indices: 5503--5536  Score: 52
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       5493 AAAGAAGAAT

                 *          
       5503 TAAAATTAAATCTAAC
          1 TAAAAGTAAATCTAAC

                            
       5519 TAAAAGTAAAT-TAAC
          1 TAAAAGTAAATCTAAC

               
       5534 TAA
          1 TAA

       5537 GAAAGCAATC


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  15    7  0.41
  16   10  0.59

ACGTcount: A:0.59, C:0.09, G:0.03, T:0.29


Consensus pattern (16 bp):   
TAAAAGTAAATCTAAC

Found at i:8108 original size:6 final size:6

Alignment explanation


    Indices: 8086--8117  Score: 50
    Period size: 6  Copynumber: 5.7  Consensus size: 6

       8076 TAAAGCAAAG

                                                   
       8086 TAAAT- TAAATC -AAATC TAAATC TAAATC TAAA
          1 TAAATC TAAATC TAAATC TAAATC TAAATC TAAA

       8118 GCAGAATATA


Statistics
Matches: 25,  Mismatches: 0, Indels: 3
        0.89            0.00        0.11

Matches are distributed among these distances:
   5   10  0.40
   6   15  0.60

ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31


Consensus pattern (6 bp):   
TAAATC

Done.