Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008248.1 Corchorus capsularis cultivar CVL-1 contig08269, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6488
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29


Found at i:3141 original size:30 final size:28

Alignment explanation


    Indices: 3070--3146  Score: 84
    Period size: 29  Copynumber: 2.6  Consensus size: 28

       3060 GAACTTACAC

                *                       
       3070 AAAACGGCCAAATAAGCCCCTGAACTCT
          1 AAAAAGGCCAAATAAGCCCCTGAACTCT

               **                           
       3098 -AATTGCAGCCAAATAAGCCCCTGAACTCTTT
          1 AAAAAG--GCCAAATAAGCCCCTGAACTC--T

                              
       3129 AAAAAGGCCAAATAAGCC
          1 AAAAAGGCCAAATAAGCC

       3147 ATTTTCTGAT


Statistics
Matches: 40,  Mismatches: 4, Indels: 8
        0.77            0.08        0.15

Matches are distributed among these distances:
  27    3  0.08
  29   21  0.52
  30   12  0.30
  31    1  0.03
  32    3  0.08

ACGTcount: A:0.40, C:0.29, G:0.14, T:0.17


Consensus pattern (28 bp):   
AAAAAGGCCAAATAAGCCCCTGAACTCT
Done.