genome.fa.s8249.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008249.1 Corchorus capsularis cultivar CVL-1 contig08270, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51098

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
867--900	8	4.1	8	85	7	50	23	2	14	58	1.50
1735--1886	78	1.9	78	95	0	277	23	26	24	26	2.00
1871--1993	33	3.7	33	77	8	115	10	26	39	23	1.87
4720--4762	13	3.2	13	81	15	52	60	6	0	32	1.23
4954--4990	13	2.8	13	91	0	65	67	16	2	13	1.34
17807--17957	76	2.0	76	83	7	191	37	8	25	28	1.85
18176--18277	48	2.1	49	83	3	125	18	13	34	33	1.90
22066--22126	30	2.0	30	84	6	79	34	18	3	44	1.66
23758--23840	20	4.2	20	65	27	61	26	14	7	51	1.68
23754--23881	58	2.2	57	91	1	202	24	17	7	50	1.71
23900--24004	56	1.9	55	86	5	149	26	16	4	52	1.63
23998--24075	40	1.9	40	87	7	113	23	20	3	52	1.63
24143--24265	22	5.6	22	83	3	167	17	21	4	56	1.57
24044--24752	64	10.5	72	74	16	212	15	23	5	55	1.62
24128--24286	16	10.8	15	65	21	52	17	23	3	55	1.58
24236--24515	16	17.4	16	62	18	64	15	24	5	55	1.61
24242--24745	32	15.8	32	83	5	429	14	23	6	55	1.63
24347--24404	14	3.9	14	80	12	71	15	27	1	55	1.50
24454--24509	17	3.4	16	74	18	53	16	19	7	57	1.62
24242--24745	96	5.3	95	79	9	479	14	23	6	55	1.63
24703--24777	26	2.9	27	82	13	86	16	20	2	61	1.46
24726--24764	15	2.6	14	88	8	51	15	23	0	61	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28765--28803	20	1.9	21	84	5	53	58	2	17	20	1.50
33983--34061	34	2.2	36	80	6	90	51	10	8	29	1.65
35875--35913	20	1.9	21	84	5	53	58	2	17	20	1.50
40838--40987	75	2.0	76	86	3	214	37	8	24	30	1.84

Tables:   1

The End!