genome.fa.s8251.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008251.1 Corchorus capsularis cultivar CVL-1 contig08272, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58828

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2726--2877	30	4.9	30	68	17	114	20	20	18	40	1.91
2698--2887	94	2.0	94	100	0	380	21	22	17	38	1.93
6961--7081	64	1.9	64	84	3	163	44	17	19	18	1.87
8646--8915	54	4.9	55	84	5	373	35	17	22	24	1.95
8646--9107	113	4.0	112	83	9	533	35	17	23	23	1.95
8931--9132	55	3.6	55	79	7	226	37	17	21	23	1.94
8926--9140	114	1.9	114	87	0	304	36	18	21	22	1.95
11212--11275	23	3.0	22	71	8	60	68	10	10	9	1.39
14805--15057	71	3.6	71	90	2	384	44	7	22	24	1.79
14873--14982	31	3.3	31	65	24	78	43	7	21	27	1.79
15009--15107	51	1.9	51	97	0	189	43	7	24	25	1.79
15175--15436	41	6.4	41	81	6	262	41	10	19	27	1.84
15439--15760	37	8.7	38	84	7	256	42	10	19	27	1.84
15475--15760	74	3.8	74	81	9	298	42	10	19	27	1.84
15435--15760	111	2.9	112	81	7	378	42	10	19	26	1.84
15832--15913	36	2.3	35	81	10	94	47	13	15	23	1.81
15904--16021	37	3.2	37	85	2	148	43	6	26	23	1.79
16028--16184	37	4.3	37	88	2	210	38	10	24	26	1.88
16030--16184	73	2.1	73	85	5	215	38	10	24	26	1.88
21912--21942	5	6.4	5	92	7	55	19	19	0	61	1.35
21912--21942	14	2.1	15	94	5	55	19	19	0	61	1.35
21966--22070	34	3.1	35	91	5	187	46	18	2	32	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35097--35427	47	7.0	47	88	2	375	35	20	23	20	1.96
35097--35427	46	7.0	46	87	4	385	35	20	23	20	1.96
35539--36039	70	7.2	70	90	2	735	27	16	28	26	1.97
35539--36060	276	1.9	275	89	2	823	27	17	29	26	1.97
37066--37118	6	8.5	6	87	8	79	0	18	0	81	0.70
37065--37118	13	4.2	13	85	4	83	0	18	0	81	0.69
37063--37118	19	3.1	17	83	16	69	0	17	0	82	0.68
37063--37118	20	3.1	17	78	16	67	0	17	0	82	0.68
37704--37747	22	1.9	24	86	9	65	2	18	0	79	0.83
38242--38417	44	3.9	44	91	2	280	36	19	6	36	1.79
38342--38417	19	3.7	19	71	19	71	35	19	7	36	1.81
38423--38464	12	3.9	11	82	14	52	0	16	0	83	0.65
38427--38464	20	2.0	20	94	5	69	0	18	0	81	0.69
38442--38476	16	2.2	16	89	0	52	5	17	0	77	0.96
47975--48012	3	12.3	3	94	5	67	65	0	0	34	0.93
49940--49978	13	2.9	14	81	11	55	58	17	7	15	1.59
50435--50473	2	20.0	2	89	5	62	51	0	0	48	1.00
53803--53839	12	3.1	12	92	0	56	45	8	27	18	1.77

Tables:   1

The End!