Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008253.1 Corchorus capsularis cultivar CVL-1 contig08274, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54230

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3772--3828
30
1.9
30
89
7
89
19
29
19
31
1.96
6128--6166
15
2.5
15
87
4
51
25
7
5
61
1.44
6217--6568
196
1.8
195
96
1
652
22
18
20
38
1.93
18619--18657
15
2.5
15
87
4
51
25
7
5
61
1.44
29672--29747
26
2.9
26
84
3
100
42
25
17
15
1.88
34535--34561
2
13.5
2
100
0
54
48
0
0
51
1.00
34933--34976
22
2.0
22
86
8
63
40
11
4
43
1.61
35123--35208
45
1.9
45
81
9
104
38
15
12
33
1.85
35247--35508
22
12.1
22
70
13
107
35
14
9
40
1.78
35258--35527
44
6.3
44
73
12
179
35
14
9
40
1.78
35609--35862
22
11.4
22
69
11
115
32
13
11
42
1.80
35886--35987
22
4.6
22
72
11
75
41
19
5
33
1.76
36050--36107
22
2.5
22
83
10
73
43
17
6
32
1.75
36097--36252
22
7.0
22
72
12
122
36
16
12
34
1.86
36097--36218
46
2.7
43
80
9
145
35
17
13
34
1.88
37401--37464
31
2.1
31
91
2
103
50
4
17
28
1.66
39414--39454
16
2.6
16
88
0
55
21
0
31
46
1.52
39932--40015
41
2.0
41
84
8
109
51
2
7
39
1.42
46780--46813
11
3.2
10
84
15
50
29
2
17
50
1.61
47957--48020
3
21.7
3
83
3
85
34
1
1
62
1.14
48024--48077
28
1.9
28
84
0
72
11
25
3
59
1.48
50668--51442
35
22.7
34
81
8
785
38
10
18
32
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51117--51240
16
7.1
18
66
15
71
37
8
16
38
1.78

Tables:   1

The End!