Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008255.1 Corchorus capsularis cultivar CVL-1 contig08276, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31044

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
238--303
26
2.5
26
90
2
105
42
6
9
42
1.61
659--770
31
3.6
31
80
3
118
35
25
8
30
1.85
1951--1977
1
27.0
1
100
0
54
100
0
0
0
0.00
7094--7130
18
2.1
17
95
5
65
51
8
24
16
1.71
8699--9322
319
2.0
319
96
0
1140
19
29
20
29
1.97
16844--17010
31
5.5
31
71
14
141
32
19
20
27
1.97
16879--16981
30
3.4
30
72
9
102
31
19
21
28
1.97
16848--17010
60
2.7
61
95
0
283
33
19
20
26
1.97
17040--17178
31
4.5
31
78
10
117
25
17
18
37
1.93
24078--24120
23
1.9
23
90
4
70
48
16
30
4
1.66
30011--30061
21
2.4
21
80
9
59
9
23
1
64
1.34

Tables:   1

The End!