Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008259.1 Corchorus capsularis cultivar CVL-1 contig08280, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48187

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
764--801
20
2.1
18
85
14
51
39
10
21
28
1.86
3041--3128
31
2.8
31
82
0
104
21
23
21
32
1.98
5786--5836
26
2.0
26
100
0
102
52
0
7
39
1.30
8019--8069
2
25.0
2
96
4
93
0
49
1
49
1.12
9657--9731
4
18.8
4
100
0
150
25
0
24
50
1.49
9908--9940
15
2.1
16
94
5
59
42
0
0
57
0.98
12705--12747
2
22.0
2
81
13
54
46
4
0
48
1.22
12705--12747
9
4.4
10
85
11
54
46
4
0
48
1.22
29925--29972
23
2.1
23
84
3
62
50
29
4
16
1.64
44710--44741
13
2.5
13
95
5
57
84
0
15
0
0.63
44709--44740
12
2.4
14
85
15
50
87
0
12
0
0.54
45289--45325
2
18.5
2
100
0
74
48
0
0
51
1.00
45396--45443
23
2.1
23
88
0
69
45
18
20
14
1.85
45701--45739
4
9.8
4
94
0
69
48
23
2
25
1.63
47561--47592
12
2.8
12
95
4
57
28
0
0
71
0.86
47736--47760
13
1.9
13
100
0
50
44
0
0
56
0.99

Tables:   1

The End!