genome.fa.s8262.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008262.1 Corchorus capsularis cultivar CVL-1 contig08283, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112410

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4929--4975	23	2.0	23	100	0	94	42	19	17	21	1.89
7410--7613	102	2.0	102	99	0	399	30	19	16	33	1.94
14310--14408	14	7.2	14	65	13	53	44	4	6	45	1.47
14299--14423	41	3.0	41	94	1	214	41	4	6	47	1.50
14741--14778	11	3.5	11	89	10	51	39	0	2	57	1.12
14835--15044	103	2.0	103	84	5	273	44	11	13	30	1.79
18375--18399	2	12.5	2	100	0	50	52	0	0	48	1.00
21388--21534	73	2.0	73	98	0	285	22	30	8	38	1.83
28490--28551	30	2.1	29	84	6	79	53	9	24	12	1.69
30406--30504	31	3.2	31	82	0	117	19	20	26	34	1.96
30454--30556	53	1.9	53	88	0	152	16	20	26	36	1.93
34348--34694	172	2.0	172	99	0	685	27	12	18	41	1.86
42185--42270	45	1.9	45	97	0	163	33	19	22	24	1.97
42723--43205	166	2.9	165	84	3	646	28	15	17	38	1.90
44206--44363	83	1.9	84	90	1	255	51	3	12	33	1.55
44261--44474	115	1.8	114	88	5	322	51	2	12	33	1.54
44843--44901	30	2.0	29	90	3	91	28	10	27	33	1.89
44843--44912	30	2.4	30	85	7	90	27	10	27	35	1.88
50462--50515	19	2.8	19	82	0	72	48	1	1	48	1.23
53023--53072	19	2.5	20	71	12	50	50	2	0	48	1.12
53270--53333	21	3.2	20	77	8	67	39	14	18	28	1.90
60370--60404	15	2.4	14	90	4	52	0	14	0	85	0.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64895--64932	1	38.0	1	100	0	76	100	0	0	0	0.00
66288--66321	15	2.2	15	89	5	50	73	0	0	26	0.83
71600--71650	6	8.5	6	93	0	84	0	45	0	54	0.99
72706--72747	18	2.4	18	96	4	77	11	26	19	42	1.85
78039--78090	23	2.3	23	86	0	77	5	15	19	59	1.56
87675--87728	27	2.0	28	85	10	76	5	38	1	53	1.35
88812--88907	38	2.6	37	78	3	120	13	17	11	57	1.65
89741--89975	122	2.0	119	86	5	323	36	10	6	45	1.65
90238--90346	22	5.0	21	76	6	83	35	8	17	38	1.80
90261--90341	21	3.6	22	77	12	76	38	11	13	37	1.80
90259--90368	22	4.9	24	77	9	72	35	10	17	37	1.83
90454--90535	22	3.7	22	69	11	60	35	8	17	39	1.80
90498--91127	22	28.8	22	67	17	113	38	10	16	35	1.82
90590--90624	18	2.0	17	88	5	52	40	14	8	37	1.76
90758--90837	23	3.5	23	84	1	99	41	6	13	38	1.70
90758--90883	45	2.8	45	79	5	114	39	9	13	37	1.77
92473--92515	7	6.1	7	94	0	77	25	13	30	30	1.94
95528--95573	21	2.2	21	84	0	56	19	19	0	60	1.36
110974--111032	29	2.0	29	80	6	66	20	15	5	59	1.55
111049--111082	15	2.3	15	90	5	52	20	14	2	61	1.46
111000--111235	43	5.6	43	82	4	275	19	21	4	54	1.61
110991--111246	85	3.0	85	84	7	313	19	21	3	55	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111333--111458	38	3.3	38	94	0	225	26	17	7	49	1.72
111431--111541	29	3.7	32	74	13	92	18	22	4	54	1.61
111459--111549	32	3.0	29	73	12	76	15	21	3	59	1.50
111611--111683	32	2.3	31	84	11	94	23	24	6	45	1.77
111626--111696	32	2.2	32	85	5	90	21	23	7	47	1.75
111673--111770	38	2.5	39	77	8	110	25	21	5	47	1.71

Tables:   1

The End!