Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008265.1 Corchorus capsularis cultivar CVL-1 contig08286, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62868

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9636--9743
32
3.4
32
83
2
128
15
12
35
37
1.85
10103--10139
19
1.9
19
89
10
58
29
5
0
64
1.15
10302--10385
22
4.0
21
76
9
82
35
9
15
39
1.80
10391--10439
22
2.2
22
85
7
64
24
6
24
44
1.76
10641--10689
25
1.9
26
87
4
73
44
6
14
34
1.70
10643--10835
22
8.6
22
70
15
101
41
8
13
35
1.75
10943--10992
19
2.5
20
84
12
68
46
12
14
28
1.79
10943--11418
22
22.0
22
68
10
142
36
10
16
36
1.83
11149--11200
23
2.3
23
83
3
70
34
5
19
40
1.75
11711--11769
16
3.7
16
82
8
75
8
8
27
55
1.58
11703--11770
32
2.1
32
88
0
100
8
10
27
52
1.65
11703--11776
16
4.6
16
70
6
60
8
9
29
52
1.62
16694--16731
11
3.5
11
85
10
51
57
2
0
39
1.12
19886--19910
3
8.3
3
100
0
50
32
0
68
0
0.90
21509--21546
19
2.1
19
85
9
53
7
28
0
63
1.23
26886--26952
30
2.2
30
89
0
98
38
5
20
34
1.77
47977--48005
14
2.1
14
100
0
58
58
13
20
6
1.58
48935--48970
17
2.1
17
100
0
72
55
5
16
22
1.62
49244--49273
14
2.1
14
100
0
60
50
26
6
16
1.70
49335--49381
24
2.0
24
100
0
94
38
17
12
31
1.87
53147--53171
1
25.0
1
100
0
50
0
0
0
100
0.00
58316--58392
27
2.8
26
80
11
82
18
19
24
37
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61145--61401
51
5.1
50
75
7
223
41
5
17
35
1.73
61163--61351
51
3.7
51
80
6
231
41
3
19
35
1.69
61145--61402
101
2.5
101
90
1
399
41
5
17
34
1.73
62052--62258
47
4.4
47
88
1
301
47
9
20
22
1.78
62052--62258
94
2.2
94
92
2
337
47
9
20
22
1.78
62290--62355
31
2.1
31
88
8
98
51
6
16
25
1.67
62203--62374
71
2.4
71
78
11
174
52
8
14
24
1.70
62473--62521
21
2.3
22
82
10
66
61
2
20
16
1.44
62512--62597
35
2.5
35
84
0
109
50
9
20
19
1.75
62581--62668
21
4.1
21
73
7
79
48
6
22
21
1.73
62649--62704
15
3.9
15
74
9
62
57
5
21
16
1.59
62686--62759
22
3.4
21
80
12
71
54
6
18
20
1.66

Tables:   1

The End!