genome.fa.s8266.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008266.1 Corchorus capsularis cultivar CVL-1 contig08287, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19922

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3631--3812	80	2.3	80	88	0	265	49	5	20	24	1.70
3634--3819	40	4.7	38	71	10	131	50	5	19	25	1.69
3964--4332	7	51.6	7	64	16	89	55	2	23	18	1.55
3964--4091	36	3.5	36	82	9	161	56	2	25	16	1.52
4028--4084	29	2.0	29	82	0	69	63	3	21	12	1.43
4110--4614	35	14.2	35	73	16	201	55	2	23	18	1.56
4259--4420	88	1.8	88	86	5	238	54	3	22	19	1.57
4224--4592	158	2.3	158	97	0	686	54	2	23	19	1.58
4374--4475	21	5.6	20	64	29	57	53	2	25	17	1.57
4417--4578	88	1.8	88	88	5	247	55	3	22	18	1.56
3988--4623	123	5.3	120	80	12	576	55	2	22	18	1.55
4582--4638	15	3.9	15	75	13	64	57	5	15	21	1.57
4573--4636	29	2.2	28	83	10	76	54	4	20	20	1.62
3984--4222	127	1.9	123	79	15	130	56	2	22	17	1.53
4648--4794	22	6.8	21	78	12	136	50	6	21	22	1.70
4620--4785	86	1.9	85	82	11	205	51	6	19	22	1.68
4726--4789	15	4.3	15	70	18	53	56	4	17	21	1.59
4580--4794	44	4.9	44	78	10	194	52	5	20	21	1.66
4731--4830	21	4.7	21	78	11	80	52	4	21	23	1.64
4783--4852	21	3.3	21	86	4	88	52	4	20	22	1.63
4746--4836	35	2.5	35	79	10	87	51	3	21	23	1.62
4925--4971	13	3.5	13	72	16	51	61	0	25	12	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4916--4973	27	2.1	27	90	3	89	58	1	22	17	1.47
6418--6503	42	2.0	42	91	4	138	24	43	23	9	1.83
6458--6487	12	2.5	12	94	0	51	23	40	23	13	1.90
8510--8540	13	2.5	12	94	5	53	87	0	0	12	0.55
10122--10235	33	3.6	31	83	5	131	32	10	16	40	1.83
15029--15192	69	2.4	69	93	5	282	10	25	40	23	1.86
15029--15221	33	5.7	33	78	12	205	9	25	40	23	1.84

Tables:   1

The End!