Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008267.1 Corchorus capsularis cultivar CVL-1 contig08288, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24383

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2013--2064
10
4.9
10
73
13
50
5
23
48
23
1.72
2014--2154
33
4.3
32
87
3
147
9
27
41
20
1.84
4716--4755
21
2.0
21
85
5
55
42
17
17
22
1.89
8044--8551
156
3.3
154
75
10
500
29
13
20
36
1.91
8900--8936
17
2.2
17
100
0
74
24
37
10
27
1.88
9445--9481
17
2.2
17
95
0
65
27
13
37
21
1.91
9821--10367
156
3.5
156
80
5
570
34
21
14
29
1.93
14794--14851
16
3.6
16
79
6
55
31
32
22
13
1.93
14793--14867
32
2.3
32
84
4
89
29
33
22
14
1.94
15542--15575
15
2.2
16
90
10
54
5
20
5
67
1.33
15924--15954
2
15.5
2
100
0
62
51
0
0
48
1.00
23972--24259
141
2.0
141
99
0
567
32
9
12
44
1.76
24346--24383
2
19.0
2
100
0
76
50
0
50
0
1.00

Tables:   1

The End!