Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000827.1 Corchorus capsularis cultivar CVL-1 contig00827, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7129
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31


Found at i:1901 original size:7 final size:7

Alignment explanation


    Indices: 1889--1916  Score: 56
    Period size: 7  Copynumber: 4.0  Consensus size: 7

       1879 CAAAAGGTCA

                   
       1889 TATATAT
          1 TATATAT

                   
       1896 TATATAT
          1 TATATAT

                   
       1903 TATATAT
          1 TATATAT

                   
       1910 TATATAT
          1 TATATAT

       1917 GAAAGGAAAG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   21  1.00

ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57


Consensus pattern (7 bp):   
TATATAT

Done.