Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008271.1 Corchorus capsularis cultivar CVL-1 contig08292, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79315

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3258--3294
3
12.3
3
100
0
74
67
0
0
32
0.91
8037--8113
2
42.0
2
69
21
53
41
0
2
55
1.13
8038--8113
38
2.0
39
94
2
136
40
0
2
56
1.13
9453--9643
70
2.8
69
85
6
255
45
10
22
20
1.82
9630--9654
11
2.3
11
100
0
50
36
0
40
24
1.55
11745--11776
14
2.2
15
94
5
57
43
0
0
56
0.99
12293--12420
62
2.0
63
95
4
231
28
11
7
51
1.66
13006--13031
13
2.0
13
100
0
52
23
30
0
46
1.53
13260--13365
53
2.0
53
98
0
203
34
9
12
43
1.75
13553--13611
19
3.5
19
65
29
60
35
5
11
47
1.62
13565--13614
17
3.1
17
68
26
54
38
6
14
42
1.70
13554--13614
31
2.0
31
100
0
122
36
4
13
45
1.64
18321--18360
21
1.9
22
85
10
57
65
5
2
27
1.27
18935--18973
3
13.3
3
94
5
71
33
0
0
66
0.92
18936--18970
17
2.1
17
100
0
70
34
0
0
65
0.93
18935--18975
20
2.0
20
100
0
82
34
0
0
65
0.93
20248--20279
11
2.6
13
80
19
50
6
9
25
59
1.52
20254--20279
11
2.4
11
100
0
52
7
7
23
61
1.49
20789--20824
14
2.6
13
87
12
54
66
0
2
30
1.06
20795--20824
7
4.4
7
95
4
53
70
0
0
30
0.88
20789--20828
17
2.3
17
86
4
53
65
0
2
32
1.06
21854--21894
21
2.0
20
85
4
55
43
31
2
21
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23210--23277
26
2.6
26
97
0
127
54
11
0
33
1.37
23210--23281
11
5.4
15
69
25
63
55
12
0
31
1.37
23211--23330
52
2.4
49
74
18
113
54
10
1
33
1.45
23559--23601
20
2.2
20
91
0
68
34
9
37
18
1.83
24258--24326
29
2.3
30
80
11
88
43
20
2
33
1.67
25454--25489
17
2.1
17
100
0
72
50
16
5
27
1.68
29530--29577
24
2.0
24
100
0
96
45
16
4
33
1.67
30986--31015
14
2.1
14
100
0
60
30
13
0
56
1.37
31585--31610
12
2.2
12
100
0
52
7
0
23
69
1.14
38326--38360
4
8.8
4
93
0
61
74
0
0
25
0.82
38856--38952
50
2.0
49
85
6
133
38
8
1
52
1.38
39378--39455
21
3.6
21
75
13
68
39
11
14
34
1.82
39503--39568
22
3.0
23
89
6
93
46
7
7
37
1.61
39504--39559
11
5.2
10
74
21
51
46
7
5
41
1.54
45261--45347
33
2.6
33
90
0
147
21
20
19
37
1.94
48184--48223
2
19.0
2
87
5
53
50
2
2
45
1.28
48262--48321
29
2.1
29
83
0
75
36
20
10
33
1.86
55205--55273
32
2.2
32
86
0
93
42
27
15
14
1.86
56187--56220
16
2.1
16
100
0
68
11
11
32
44
1.77
57224--57278
27
2.0
28
92
3
94
41
14
20
23
1.89
75951--75988
19
2.0
20
94
5
69
31
10
7
50
1.66
79050--79084
2
17.5
2
100
0
70
48
0
0
51
1.00

Tables:   1

The End!