Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008272.1 Corchorus capsularis cultivar CVL-1 contig08293, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110807

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--85
2
42.5
2
97
0
161
1
50
0
48
1.08
518--557
21
1.9
21
85
10
55
45
12
0
42
1.42
16248--16273
1
26.0
1
100
0
52
0
0
0
100
0.00
17369--17489
62
1.9
63
88
1
181
20
13
5
60
1.53
25834--25882
25
2.0
25
84
7
66
48
28
4
18
1.66
27348--27594
123
2.0
123
91
0
404
27
20
25
26
1.99
29271--29489
39
5.7
39
95
1
370
23
19
36
20
1.95
30005--30642
320
2.0
319
94
0
1116
22
21
32
23
1.98
32303--32482
93
1.9
92
93
5
310
39
11
14
35
1.81
43899--44005
53
2.0
53
98
0
205
40
6
11
42
1.67
45422--45470
18
2.6
19
93
3
82
38
26
16
18
1.91
50975--51004
15
2.0
15
93
0
51
33
3
13
50
1.58
51354--51444
45
2.0
45
100
0
182
28
16
26
28
1.97
53743--53775
16
2.0
17
88
5
50
51
24
12
12
1.73
53964--54024
16
3.9
15
75
10
50
39
29
6
24
1.80
72988--73016
15
1.9
15
100
0
58
62
10
0
27
1.28
82012--82046
11
3.2
11
91
0
61
0
2
17
80
0.84
84022--84079
12
4.7
13
74
14
52
34
8
12
44
1.72
84022--84079
25
2.4
25
82
8
75
34
8
12
44
1.72
97896--97935
20
2.0
20
100
0
80
60
10
15
15
1.60
98000--98116
61
1.9
61
96
0
216
23
17
16
41
1.89
101949--101998
27
1.9
27
84
8
68
44
14
14
28
1.83

Tables:   1

The End!